GgaINT0093395 @ galGal4
Intron Retention
Gene
ENSGALG00000013073 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr2:79901982-79904879:+
Coord C1 exon
chr2:79901982-79902046
Coord A exon
chr2:79902047-79904761
Coord C2 exon
chr2:79904762-79904879
Length
2715 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCATGCTGCTGTCCTGACAGAGA
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTCCAAGCATACATGGCTCCTGGTGTCTCGAATGAGAAGAAAACGGAAGATGAACAGTCTTCAAG
Seq A exon
GTGAGATTGAGAAATTTCTTTTCATGTCCAAGTTCACTCTTACCTTCCTTCCCAAACTCCAAAATTCATTACACAGCTGTTTAATTTAAGATCAAGTATATTATAGAAATATTGACAGTAACATCAGTTATCTACAGAGAGAGCTTTTCTGGAAAACCGTTTTCATTTATCATGGCAATGAATTTTCCAGGCATAGGTGATGCTATGATGGCTTTTCATCCGGTGAGCTGTTGAAATGCTGACTTTGGTCACTGCCTGTAGCTTGACCTGCAGCCTGAAGAGATAGAACAAAAATTTCAACCTGTTTGTCTCATCCTTTAACTCATTTCAGTGAAGCCATATGCGTGTGTTTAGCCCTCAGATATTCATGTTCTCATGAAATCCCTCAGAATTATAGGTACTTTGAGTGGTCGGTGCGAGGGAATAAATTGTCTGCTCCATTGAGCCCAAGATTTTTATCAGGCAAACTTTGCCTCTACTGTAAATGCAGGGCATTGGCTCCATGTGCAGATAGCAATATGCTTACTTTTATTGCCCATTACCCCAGGGTCCAAGTCTGCAATTAGATTTGGATGGGCAGATAACAAGCACAAATCAGTTACAGCGTTTAAATGCAATGAGACTGTGGGGTGAGGAGCGCTGCTGAAGGACAGGAGATGAAAGAGGTAAAATGCAGACACAGCTGAGGAAGGAAGCCGTAGTTGGGCTGGGCAGGAAGACAGCAGTGCTCGCACGTACCACTTGAGTTTCACAGCCTTTTAATAGAGGCCTCGCCTTTTTCCAGTTTGTTTCCTGGAGAGAAGCTTTTGCTGCTGGTATTCTCATAAAGAAGGAAATATATTTTACATGTCCGAGAACGAACTGCAAAGTGATTTTGGGTCATATCCTCTATATATCTAATAGCCATTTCGATGAGGATTATCCCAGCCAGCTATTTGTTCTGCATTAGCAGCCCATTAGGTATTGGCAGAGAGTCCCATGAAACCACTCAGAGAAGGCAGCCTGGGAATTCTGCTTGAGGGAGCTGGCAGTCTCCTGGGTGGTGTGCACTGTGCCGAAGTGCTGTAACCTGCTCTTTGTTCCTCCTGGTCTCTCCATGCCAAACTACTTTCCTTAGGCAGGGGATGAGCTGGGTGGAAGGAGAAGAGACGCTCACCATGTCAGACTGCTCTTTCAGTTACTGAAAGCATTAGGCAGTGGTGGACAGAGGCAAAGAGGGTGGATTGGGGTGCATTATGTTGGTTGTAATAGCTGCTGATGAATTGATGGTGACGTTAGAGAGGGACTTTCAAGAACAAGTGATAGAGTACTGGGTTTTTAACTACTTTCTTTGCTTTTTGAGGAACAACTCAGTGAACTCAGTATGGGCATGTTGGCAATTTTAGGCTTCTTAAGGTAACAATAGATCCCGCATAGAACTGGTAGATAAAGATGTAGGACCAACAGGAAAGTACCGCCCTTCTGGGGAGGCATTAGAAGACATACAGGATAACCAAAACCATCTAAATAACACAGGCACTTCTGTTTAGGCTTCAGAGTTCTGCCTGGAAAGTCTTTCTTTCTTTCTTTCTTTTTTTGCATAAACTCCAGAGAAACTCTTTCATTTGTCCCCTCTGACAAACTGGTCTGAATTTGCTGAGCCATGCTGTGACTGCAGTGAGTGTTCATTAAGCTGTTAAGTCATCTTCTTTTGTCTGGAAGATACTTTATTTCATCTCTCAGAAACTGCTTTGAATTATTGATTGGTATTTTACTTCAGCTTGTTATTATTGACTCATATTTCCTACCTGTTTCAGCTGAACGTTAAACATGGAGTGCAGAGAGAAGGAGGGTGTTTTATGAGTCATTTAGCTTGCTTAGTTCACCACCAAATTTTCCATGAAGGCGGTTTGACATGCTAAATAGTTTAGTTTTCTCTCACTGCTTTGGCATTTCCTGATTTTCCAAAAAGCTGTCTTTTTTAGGTGTATCACTTCCTTACAAGAAGCAACTTAAGAGGAAATGAATTCTTTTTACTTCTTCCTCTCCTTCCCTTTCTTCTTGTATTGTATTTCTCTTCCATTTTTTTTTCTTTCTTTGCTTCATATTTTCATTTGCTTCTTTCCTGGCCTATTCAGCTTCTCTGCACTCTCTTTACTGATTTCAGGACATAGGTTATTTTCTCCTGGCTGGGTGACAGTGTAAACAGTGAGGCAAATTGCCAGAAATTCTGTTTGGGCCTGTCTATAAAGCCCAGCTCTTCCCACCTGTCCCAGGTAGCTAGGAGGGTTTTTCAAAACACAGAGGTCAAGTTTGCTTTTCAGCTTTGCTGTGTACTGTCCGTGTACTAAAGTGGTCTATTGACTATCCCCCAGTCTTGCTCCCATTGCTCTGCTCACCTCAAAGCCCCACCCTGGATCACAACTTTGATATTGTTCAAGGTAAAGGTTGCACTGCTGTAAATGTTTTCCACTGCCTGGGCTTTTCTTCAGCACCTGTATCCTGTGCAATGAATGCAATGCTTAGTATCAGGTATGATTCATTAGATGATGGAAGAAGGTTATGAAATTTAGGATTTCCCTAACATAATTTGTGTGGAACTAAGATCAGGTAATGTAGGCATGCTTAGATGTGACATTTCCCAGCTTTTACTGCCTGACTTTGCAAAATTAGGATCTGTTTGATGTAAGTTTTTGTCTGTATTCTGTATGTTCCACCATGCTGCTGTCCTGACAG
Seq C2 exon
AGAAAATTCTATCCATCTGTGCAACCCTCACCTGGAAAAAATGAAAGAAGACATCCTATACCATTTTGCTCTTGGGACCGGTACCCATGATTTTCCTGCACTGTTTGGAGATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073:ENSGALT00000031003:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]