BtaINT0159741 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107157861-107160240:+
Coord C1 exon
chr2:107157861-107158019
Coord A exon
chr2:107158020-107160060
Coord C2 exon
chr2:107160061-107160240
Length
2041 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CTGCCCATCTCTCCCTGCAGGGA
3' ss Score
12.29
Exon sequences
Seq C1 exon
GGCAGCCAGGCCAGTCAGGATGAAATCACAGCCTCTGCCTATCAAGCCGTCATCTTGGACCAGGAGTACAACAATGAACCGGTCCAGATCCGGGTCCCGATGGGCAAGGAGCCACCTCACCTCATGTCCATCTTCAAGGGATGCATGGTGGTCTACCAG
Seq A exon
GTGCGGCAGTGAGGTGGGGTGGGCTCCAGGAAACAGGGGAGAGAATGCGGGGTGGGGGACAGGGCTAGGGGGCAGCCCCCTCTTCCTGGGAGGGGACTGTTTGAGGCTCCATAACTTATGTGCAATGGAAATAGAAACAACTACTCAATATTTTAAAAAATCCATTTAATAAACACTTAGCATGTATAAGACTATTACTCTCTACACCCCAACTCCTCTTTAGATGAAAAAAAGAAGTTATTTTGGATAGATGTGCGGAATGATGAACCTAAGGTGCACTGGCACCTTTTTTTTTTTTAACTTTTTATTTTGTATCGGTGTGTAGCCAATTAACAATGTTGTGATAGTTTCAGGTGAACAGCAAAAGGACTCAGCCATACATATACATGTATCCATTCTTCCCCAAACTCCCCTCCCATCCAGGCTGTCAAATAACCTGGAGCAGACTTCCCTGTTGAAATAGCCATCTCTTGCGTTCCTTTAGCAATAACCTATTTATTGAACACTTACTAAGTACACAGCCCTCTGCAAAGACCGAGGGGGAGAAGAATGCCATGCTAATGCTGCTTACCATCTTGCTGAACGAGCAGTGAATCAACAGTCCAAGGCAGGGTGTGCCTCAGTTCAGTTCAGTTGCTCAGTCATGTCCGACGCTTTGCCACCCCATGGACTGCAGCATGCCAGGCCTCCCTGTCCATCACCAGATCCTGGCGTTTACTCAAACTCATGTCCATTGAGTGGGTGATGCCATACAACCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTTCCTTCAATCTTTCCCAGCATCAGGGTCTTCTCAAATGAGTCAGTTCTTTGTATCAAGTAGCCGAAATATTGGAGCTTCAACTTCAGCATCAGTCCTTCCAATGAAGATTCAGGACTGATTTCCTTTAGGATTGATTGGTTTGATCTCCGTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCCCAGTTCAAAAGCATCAATTCTTCAGTGCACAGATTTCTTTATAGTCCAACTCTCACATCTATACATGACCACTGGAAAAACCATAGCTTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTACAATATGCTGTCTAGGTTGGTCATAGCTTTTCTTCCAAGGAGCAAGCATCTTTTAATTTAATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCCCCCAGAAATAAAGTCTGTCATTTTTTCCACTGTTTCCCCATCTATTTGCCATGAAGTGATGGAACTGGATGCCATGATCTTAGTTTTCTGAATGTTGAGTTTTAAGCCAACTTTTTCACTCTCCTCTTTCAATTCATTAAGAGGCTCTTTAATTCTTCTTCGCTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCTGGTAATTTTCATTCCAGCTTGTGCTTCATCTAGTCCAGAATTTCTCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGACTTGACGTACTCCTTTCCCGATTTGAAACCAGTCTGTTGTTCCACGTGTGCTTAAATGCCAGAAATACGTTTCATTCATAGGGACTCGTGAATACAGTGATCAGTGAACAGGCCGAGTCCATGGTGGAAAGAGGGTTGGGAGGAGATTTTGACACTGGGGGGGGTGGGGGCGGGTCACAGCTCCGCAGGGGTCAAATGAGGGCGATGCAGAGGCATAGCCAGCACGAAGGCCCAGGGGAAAGGCCCTGTGGGGAATCATGAGAAGCTTGGCTGAGCTAAATGGAGGGTTTGGAGAGCTGAGAGTGACCCTGGAAAGGCAGGTTGCCTCCTCATGTGAGGCCTCAAATGACCCCCTGAAAGCTGGGTTCTGGTCTGTAGACCTAGAATGGTTCTAGTCTGAACCAAGCTGTCAGGCAGGGGAGTGCCCATGACCAAAGCAATGTTTTGGGAAGACTAGTTCGGTGATGGTGTATCAGAGGACCACCTTTGGTAAGTTACTCCTGCCCATCTCTCCCTGCAG
Seq C2 exon
GGAGGCACATCCCGGGCCAACAGCGTGGAGCCTGTGCCCTCCACCCGGCTATTCCAGGTCCGAGGAACCAGCGCCAACAACACCAAGGCCTTTGAGGTCTCACCCCGGGCCGCCTCCCTCAACTCCAACGACGTCTTCATCCTCAAGACTCAGTCCTGCTGCTACTTGTGGTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543:ENSBTAT00000024683:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]