MmuINT0172920 @ mm9
Intron Retention
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74472111-74473305:+
Coord C1 exon
chr1:74472111-74472269
Coord A exon
chr1:74472270-74473125
Coord C2 exon
chr1:74473126-74473305
Length
856 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
CCTTCCCCTTATGCCCGCAGGGA
3' ss Score
11.02
Exon sequences
Seq C1 exon
GGCAGCCAGGCCAGCCAGGATGAAATTGCAGCCTCGGCGTATCAAGCCGTCCTGTTGGACCAGAAGTACAATGACGAGCCAGTACAGATCCGGGTCACGATGGGCAAGGAGCCGCCTCACCTCATGTCTATCTTCAAGGGCCGCATGGTGGTTTATCAG
Seq A exon
GTGCAGTTGCTGCACTGAGAGATGGCATCTGGGAGATGGGGAAGGGGTTGTATGGTGGGCATGAGGCTGGGGCCAAGCCTGTTCCTCATAGGAGAGGTCCCTTGTCATGTATAACAGAGACCAGCATGTTTGCTGTAGGGTCATAGGGAAGGAACCTTCGAAGTGTACAAATATTATTTACTCTTCTTGGTCTCTGCTCCATGAAAAAGGAGGGTTTTGAGGGGCTAGCTTTGCTGTACCTTCCCAGTGAAATGAACCAGACATCTCGCGCAGCTGTTCAAAGCAGTGATCTCTTTGTGGCAAACCTTCTAAACACACAGTCTTTTGCAACTCAGGAAGTGAAGCGAGACAGGACAGGCCATCGCTCGTTGGGAAGGGATGGTCATATGGCTCTGCCTAAGTGGTGACTTCCTGGCTTGGAGCACTGTGCAGTTAAATACCAGGGATGGAAGTTGAGTTCAATGGGAGGCAGGGGGCAGGCAGAGGACTCGTGGTGGGAAGGAATTCAGAGGACCTCTAGACATTTGGGGCAGGGGGAAACTAGCTCTCTGGAGGTAAAATGGGGGCTTACAGTGTAGGGGCACAGCTTTCCTGAGGGTTTAGAGAAGGAAAGAGAAAGAACACAAAGATAGTTGGTGCCTTCATTTCGAATTTATGGGCCCTCAAGGGCCAGCAGAGTCCTCGGACTTCACAGAAAAGCAGTGGAAAGTCACTGAGAATCTTGAGCAGCAGAGAGCCAAAATCCAAGCTGTCTTTGGGCTGGCTCTTTAGCCCTTTCCCCCTCCGGATGTTCTTCACATCACTGTGTCCCCTTCATGCTTGTCCCTGTTTTCCCACCTTCCCCTTATGCCCGCAG
Seq C2 exon
GGAGGCACCTCCCGAAAGAACAACTTGGAGCCTGTGCCCTCTACGAGGCTATTTCAGGTCCGAGGGACCAATGCTGATAACACCAAGGCTTTTGAGGTGACAGCCCGGGCCACGTCCCTCAACTCCAATGATGTCTTCATACTCAAGACTCCGTCCTGCTGCTACCTGTGGTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175-Vil1:NM_009509:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=77.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCCAGCCAGGATGAAAT
R:
CTTCCCACACCACAGGTAGCA
Band lengths:
334-1190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: