BtaINT0159756 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11478629-11480977:+
Coord C1 exon
chr22:11478629-11478696
Coord A exon
chr22:11478697-11480910
Coord C2 exon
chr22:11480911-11480977
Length
2214 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGC
5' ss Score
3.93
3' ss Seq
CTCCCTCCCTCCTGATCTAGGAT
3' ss Score
12.03
Exon sequences
Seq C1 exon
ATGGAGCACAACAAAGATGCTGTTTGGAGAGCCAATGGCTGTCTGCAGTCTGTTTGCATCGCTTGTTT
Seq A exon
GTAAGCGTTCAGCTGTGTATCAAGAATGTGAGAGTGTTTTGGCCTGATTTACCCAAGCTGCTTGTGTTGGCTAAGCCTATTACTTGCCGCAGTGTCTGTCACCTTCTTCACAGTCAGGCTGTATGTTCAGAGTCTGTCCTGGGTTTGCAGAATCTTCATCTACCCTGCCAAACCTCTTTCTGTCCTAAGCCTGTTTGGAGAATCTGAGTCTTTTTAAACAGTCTGTCCCTCTTTCCTCATGGGTAAGATACTTATTTTTTTTTTTTTAATTGCAAAAGCTGCCCTGCATGCAAACCTCTCTGTCTACAGAGCTGGTCTTACATGCTTGGCTGGGACATTTCTTTCTGCCTAAAGACACTATCCTTGTTTTCAAAGATTTGTCTGTTTTCCGCACCTGTCCGAGTCAGCAGAACCTGTTCCCTTGGCAGGAAGTATCTCTGTCTCTAGATTGTGTCCTGCTCGCAGAGTCTTTTCCTCTTTCAGAGCCAGGTTCTGTCTGCAGAACCTGAGCCCTGTTTGTACAGTCTGGGGTGTTTTTCAGGGCCTTTGCCTATTTGCACGGCCTATCTGAACTTGCCTGGATAGAAACTCTGTCTGCAGGCTTTACTCCTACAAAGAGTTCTCACCACCAGGGGTCGCTGTGTCTGTGAGCACCTCTGTCTTTCTGTAGAGCCTATCCCTGTTGGCAGAGCCCATGTCAGTCTGCACGGTCTATTCCTAATAATTGCATGTGTACTTTTTAACAGGACCTGTTCCTATTCATGGAGTCTTTATCTGTTTCTAGAACTCATCCTTTTCTAAAGCCTGACCCTGTTTGCAGAACCTGGGCTCTCTACAGAACCCAGCCCTGTTTCAATATCTTGTCCCCGTCTGGAGCATCTGTGCTGGCCCACAGAGCTGATTTCCCAGCTGGCTCCTTTCAGCATATCCTGCCCTTTCTAAAGATGTCACTGTTAACAGAGGCCGTCTGTTTGCAGAGCCTGTGTGGGCTTACAAGACCTCTCCTGTTTGCCAAGACTCTGTCTCTAGGGGCCTTGTCTACAGAGCCTGTGTCTTTTCACAGAGCCTAAGTCTCTCAGCAGAGCTCATGACTGCTTGCCCAGCCTGTTTCCATCTCCCCGTGTGCAGGATTTGAGGCTGTTTCCCGTGGCTGTCCCTGCATACTAAGCCTGACCACGCCTAGAGAACTTTGGCCTGTTTCAGAGTTGCCTCTGTCTGAGAAGCACATCTCTGACTGGTAACTCTGTGCCTGTTTGCAGAGCCTTGCCTATCTGTGTGCCTGTTCATATCTGCAGAGTCTGTCCGTTCTGCAAAAAGTCCCTGTCTTAAGAGTTCATCCCCACCCACAAAGATTTGCAAAGCCTTTCCCATTTCTGAAAAGCTCCTCCATACCAGCAGAACCCAGGACTGTTCGCAGAGCCTTTCTCAGCATTCACAGCCTTTGCTTGTTTGCCCAGCCTGTCTGAATTTCCCCAGGTACTGTCTGTGTCTCTTCACACAGGTCGTCCTTTCAAAGGTGGTGTCTGTCAACAGAACTCATCTTTGTCAGGAGAACCTGTGCCTGTTCCATCCCTTTCTTGGGTCTCAGGAAGCTGTCCCTGTTTGCAGAGCCTGTGCTTGTACACAGAGCCTTTTCTCTGCAGGTGCTGTGTCTCTTTGCACGGCCACCTTGCAGCAGTCTGAAAGACCTTCATTTATTTGCCCTGTGTGCAGAGCCTATCTTGCCTACAGGATTCTGTCTTACTTCAAGAGCCGTGTCCCTGTTGGCAGAGCCTGTCCCTGCCTGCAGCACCTGTTGTTACTGAGCAGAGCCCTCGCCCTCTGCAAGCCTATCACCATCCACAGTGCCTGTCTCTGGCTGCAGATCCTACATCTGTCTGTTTTGAACTCTGTCTGGCAAAGGTGGTCCATAGACTCAAAGCCTACTGTTGTCTACCAAGCTCAGCCTTTTTTCAAGAGCACAAACGCAGACCACAAGCTAGGTCCCTGTTTGCAAAGCCTCTGTGCTGACATCTGCAGTACCTGTCCTGGTTTTCTGGCACTTGTGTTTATGCATCCCTCGTCATAAGGGGCACAGGCCCTGACGAAGGGGCTTTGGAGAGCTGTCGGTGAGGAGAGCTCCTGCTTGGAGCCCAGAGGACCGGGGGGCAAGGGGGGCAACCTGAGCCTAAGGACTCCGGCTTGTGTTTCCTCTCTCCCTCCCTCCTGATCTAG
Seq C2 exon
GATGGACACCAGGAGGGGCCTCCCTGACATTGAGAGTCACAGGGACCTCCACATATGGATCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]