MmuINT0172938 @ mm10
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:119052778-119057854:+
Coord C1 exon
chr9:119052778-119052828
Coord A exon
chr9:119052829-119057782
Coord C2 exon
chr9:119057783-119057854
Length
4954 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCTCCATTACTCCTGCCTAGCCC
3' ss Score
4.83
Exon sequences
Seq C1 exon
AGTGTTGCCCACAGGCTGAGTGAAGGAAGGTGCAGAGGCAGTTCCCAGAAG
Seq A exon
GTAGGCCTGGACTGGGGTGGGGGTGGGGGACCCGGTAGAGGGGTTGCTGGGAACGCAGAGGGAAGGCATGGCGTTCTAGGGCTCGGGGATCATACAGCGGCTGAAGGCTGGTAGGATTGAGGGCAGCCCCACGGTGAGAACGCTTGGCTATCTGCGCGTGGGTGGAGGAGGACCACTGTGGCAAGCCAGCGTGAGAGGAAGAAGCGGCGGGTTTTGCGTGGGTGGGCTCTCTGTCACCCCCCAGAGTCAGTTCGCCTGACTCACGACCCTCCAGCAGGCTATGCCCTCCCTTCCTGGAAGTTAAGCAAAGGAATCTCGAGGTCTACCCTCAAGTACACCTTGTTCAGGAGGAGGGGTCGGCTGGAAGGGAGAAGGGTCACCTGAAGGAAGGCGACAAACGACAAGACAAGCGGCCTGGCCGCCAAGGAGACTGGGACCCCCTCCCCCCCACACACACACACACAGTGGGTTAGAGCCCCTGCGGAGAGGGGCAGAGAGAAAGCCAGTGTCGGAGAGAAAGGAACTTCACCCTGGGAAATGAGAGGGCTTCTAGGAGGGCAGGGGGTGGGGGAGATGGGGTCCCCATGGGGGATGTACTGGTAAAAGGGGACACACATGGGCTGGGGCTCTCGTGAGCCACGGGTGACTCCGTGGGAAGAGAAGAAACCTCTAGCGGGAGGGGAGGGAACACAAAGTGTAAGAGGAGTAAAGACACCCCGTGCTTTAAAGTTCTCTTGCCTCCTCTAGCAAGAGGGATGGGGGCTCAGCTCCAGTCTGACTCTCCAGGCTGTGGGTTTTGGGGCTCCTTCCCAGCCACCCCTGGGCCACTGCTGCCCCTCTCTGAGAAGCCAGGTTAGACACTGCTTCCAGCTGCCAATATGCCCTCCTCTTCTCTGTGGCCCCGAAGTTGGACGGTGTCCTTCCCACTCCACTGTGGCCCTTAGAGCTACCTGGCCACTACCTTCTGGCTCTGTGCCTCGGGTCTCTGTCTGTCTGGGTCCCTAATCATTTTCCTGTAGCTGGTTTGATGTATAGACTCTGTCCTTGCTGAAGGGTCCTGTTGCAAGTCACTATACCCACCATGGTGTGCCATGTTCTCCGTTGCTGGAAAGGACCATTGTGTGACCACTGTGCCCATCCATCATATATGTCATTGTCACACAATGACCTCAACTAGAGGTGCTGCTGGCACGCCTGGTGACTCCCTTGGTCAATCAACAACTATCTATGGACTCCTTCTGTTCCATGTCGGGAGAGCCATGCTAACAGCACACAGGCTCTCCCATGACATGCCCAGCCCACAGCCTCCTCTGCTGTGACTCAGTGTGGACAGTCCCCCGGCCACACCCTCTTTCCAGGCCACCTTGTCCTGAGCCTAGCCCTCAGGGGCCCTAAACAAAGGAGTAAAGAATTCAGGCACCTGTGGCTCTGTAACTCTTACCTCGCCAAGTCCTCTCACGGTCACATGGGGCAGCGGGTCTGAGGGTGTTCTTGCTATGGTAGAGCAGAGCTGGATGTTCAAATTAAGAGAAAGGAAGTCAGTCACTGCTGCACCAGGGCCACCCACTCAGGAGACTCAGAACCCAGTGACTGTGTCTGCTTAGCGAGCTGCCAGGACTTCAGTTAGATGTGGGAAGTTGCATTGAGGAAAAACAAAATACTTCAACTACACACCCATCCAACTCGTGGCTGCTTGCGGTTTCCAAAGGGCTGGACAGTGAAGAGATAACAGATAGTGATAACAGAATGAACCCCGTCCCATCCCCGTGGCTCCCTGCACCCCATCCCTACAGTCCCCCTGCACCCTGACCCCACAGCCCCCTGTACCCCACCCCTACAACCCCCCTGCACCCTGACCCCACACCCCCTGCACCCCATCCCCACACTCAGATTTTCAGAGCAAGGAATTTGCAGAGCCTGTGTATAGAGTTCAGCCATCTTTCAAGGCTGGATCAGGAAGGCCTATGATTCATTGACCCAACCTTCTCAGGTCACCTGAGTCTGTCGCCTGCTGCAGAATCCGTCACAGTCCTATGCAGTCTCTGTCCTGAGTTGACAGAGCTTTTGTCTTGTTTGTAGCACCCGTGGAGCAGGTTCCAGTTTTCAATCTAGATCTCTCAACAGTGCCCCTGCCCCCACTGCCCACTGTATGAGATTTGCTTTTATTCCAGGTGCTGACGCGCTAGCACAGCCTGTCCTGGCTGCAGAGCAGACAGCACCCCTGTCTAGGCGTCTGCAAAGCTTTGTCTGCTTATGGTGCCTGTCCCTGTCTAGGGACAATGGTCCCCTCCATGCTAATGTCATCAGAACTTTGTGGGTCAGATCCTAGATCCTAATCGCTGACAGGCCTGCAGGCTGCACTTAGTCAACCATGCTCACTACATAGACACCTAAGCTCACCACACTAACTATAGACACTCAAACTCAACAGACTAACTATAGACATTCAAGCTCAACAGACTAACTATAGACAACCATGCTCACTACACTAACCATAGACAACCATGCTCACTACACTAACCATAGACACCTAAGCTCACCACACTAACCATAGACACCCAAGCTCACCACACTAACTATAGACATTCAAACTCAACAGACTAACTATAGACATTCAAGCTCAACAGACTAACCATAGACAACCATGCTCACTACACTAACCATAGACACCTAAGCTCACCACACTAACCACGGACACCCACGCTCACCACACTAACTAACCAAGCACACAATAATGAAAAGCATAAAAAGGAAATGTGACTGATGTGGCCACACTGAGAAAAGAAACAAATAGTGCAGTGAGCCCCACCCTGAGTCCTGCTGCGAGGTTGAGAGTTAAAAGGAGGACTCAGGTTTGCATAACTGAGCAGCCCTGCTCAAAGCGTGGTCCTGCCCATCACTGACCCAGGCGGTCCTGCAAGGTGGCCTCACCTTGTCAGACCTGTGTGAAAGCTCTCTTTGGGAGACAGACTCTTCCTCCAGCCATTTCCAGGGCTTCAGCCTTCCCTTCCCTCCAGAATGAAATTCCTGAGGACGCGCCAACTGGGAGGGGATAGCCATCATAGGGTGGGACACAAAGCGCCTCTCTGGAATACCTCCCCTCATTGCAGGATGGTTATGACCGGATCGCAGAACCTCCCCCGCTTTGCACAGCCTATGTGAATTTACCTGGGTACCTGGGTAGCCAGTCTTTCAGTTTGTCCCAATGGAGAGTTTCTCATTGGAAGGAGGTTGTGTTTATCTGGGAACATCCACGTGTCTCTGTAGACCTCATCCCTGTTTGCAGTCTCTACTTGTCTGTATGCTCCTGTTTGCTTGTGGACCTGTGTACAGGGCCCATCCCTACTGACAAAGCCTTGACTGACTCCAAACTGACCTATATGGCCAGCCCTTATTTGCAGGACCTGGGGTTCCTCACAGAACCTAGCCTTGCTTCATAATCCTGCGTGTGTCTGGAGGGAATGTGCTTGCACACAGCACTGGCTTCCCTGTGGCTCAGCCCACAGCTTCATACCTCTCTGCAAAAGACAACACTGTTGACAGACCCAGTCTATAGAGGAGCCTCTACAGGCTTACACAGCTTCTACGCTTCTGCAAACTCCCTGATCCCTACTGCGGGACTTGGTTCTTTACAGATTCCCAAAGCTCTTTGCAAAGCCTGCTACTCTTTTCCCTACCTGTTCCAGCTCCCTGTCTGGGGCATTTAGTCTGTTTGTCCACAGGTTTTAATTGCCTGCCTCTGTCTGTCTAGGGGGCCTTTTTGTGGTGGCTCCCTCCTGCAGAGCCTTGCGTATTGATGTGCTTGTCCGTAGCTTCAGACTCTGCCCTTTAACAGAGTCCTTTCTTAGCCACATTAGCACGGCCTTTCCCATGCAGAGCTCCTCGGTACCCACAGAACCCACAGTACCCACACCTGTTTGCAGAACCTCTTTCTCAGCTTCCAGTCTTTGCTTATTTGCCAGGCCTATCTGACCTTCCTTGGGTAGTGCCTGTGTCTCTCCACAGCTCTCTTTGTGTATGTGGATGTTATCCTTGTATACATGAAAGGTCCCTGTTTGGAGAACTCATCTCTCTCCGGGGCCCTTGAGTTGTACGATGCTTCATCAGTCTATGGAAGACATGCCGGCTTGTAAAGGCCCCACCGCCGTAGCCCGCTGCCCTGTGCAGACCCTGTATCTATTTATATACTGTTTCCAACTTTGTCAGACCTTTGTGTAGTTGCTGCCCTTAGGGTCAGAACCTGTCTGTCTGTACACCATTGAACCCCATTTCAAGAATTCACCTCCTTTGGCAGGGTCTGCCCCTGCTGACTGGATTGGCTCCTTTTATAAAAGTCTAATTTAGCACTATCTGCAGTGACTGTCCCTGAGTCTGCAGGTCTTGGGTCTGTCTAGAATCTAGCCACATGTTTCTTTTCTCCTTTTGATTTTTGAGACAAGGTCTCCTGTAACCCTCAACTCCACTCTATAGCCGAGAACGACCTTGAATCTCTCATCCCCCTGCCTCCACCTCCTGGGTGCTGGGATTAAAGCCATGCGCCACCATGGCAAGTTCTATGCGGTGCTGGGGGTCAAACCCAGTGCTTTATGTATGCTAGGCAAGTATTCTAACAACTGAACTATACCGCCAGCCCTCTGTGGCCAGTTTCTAACTCTGTCTAAAATGTTGCTACTAACGGAAGAGCCGCTCCTGGCCAGAGAGCTCAGCCTGTAGTAAGAGTTTTCCCACAGACGAACCAGGTCTCTGTATGCCCATCTACTGTGCCTGTCCTGGTTTGATGAAGTTGCACATTTAGTGACATTTACGTTCTATAATGAAGGCACTTTGGAGAGCTTTAGGTGTCAGGGAGAATTCTCACTTGGAGCCTATAGCACAGGTGGCCAGAGGCTGACCTCCAACCTGTGAACTCTGAACTCTGGCTCTCATCCTTTGTATCTCCATTACTCCTGCCTAG
Seq C2 exon
CCCGGGATGGACATCAACCAGGACCTCCCAGCCATCGACAGCCACAGAGCCTTGCAAATATGGATTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775:ENSMUST00000051386:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types