RnoINT0162871 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127735258-127739777:+
Coord C1 exon
chr8:127735258-127735334
Coord A exon
chr8:127735335-127739705
Coord C2 exon
chr8:127739706-127739777
Length
4371 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TTGTATCTCCCTTACTCTAGCCC
3' ss Score
7.77
Exon sequences
Seq C1 exon
GAGTTACAGTTCGGAGGGAGGGGCCTAGTACTGCCCACAAGCTGGGTGAAGGAAGGTGCAGAGGCAGTTCCCAGAAG
Seq A exon
GTAGGCCCGGACTGGGGGCTGGGGCTGGGGGTCGGGACCGTGTAGAGGGGTTGCTGGAGACGCAGGGGGAAGGCATGGAGGTCCAGGGCTCGGGGTCACACAGTGGCTGAAGGCTGGCAGAATTGAGGGCAGCCCCAGGTGAAGGAGGGCCACTGTAGCAGGCCAGCATGAGAGGAAGAAGCAGCCGGTTTTGCGTGGGTGGCTTTCTCTGCTGCCCCCCGCCCCCTGCCGCCCCGAGTCAGTTCTCCTGACCCACGACCCTCCAGCAGGCTATGCCCTCCCTCCCTTCCTGGAAGTTAAGCACAGGAACCTCAAGGTCTACCCTCAGGTACCCAGGGAAGAAAGAAGGTGTACAGGAGGAGGGGTTGTCTGGGAGGAAGGACGGTCACCTGAAGGAAGGAGACAAGCGGCCAGCCGATAAGACTGGGAACCCGGCACAGTGGGCTAAAGCTGGAAAGAAGGAAGCCAGTGTCGGAAAGAAAAGAACTCCCAGGAAAGGAAAGATTCCCGTGGGAAGATCAGAAGGCCTCTAGGAGGGCAGGAGGGTGTGAGATAGGGCTGCATGGGGGCGGAACTGGTAAAGGGATATCGTGGGTTGGAGCTCAGGGGACACAGGTGACTGACTCCGTGGGTAGAGAAGGAAACCTCTGCAGGAGGGGAAGATCCGAGGAGTTTAAGAGGAATAAAGGGACCCCATGTTTTAAATTTTTCTCTCCTCCTCTAGCAAGAGGGATGGGGGGGGGGGGAGGCTCAGCTCCAGTCTGACGCTTCAGGCTGTGGGTACTGGGGCACCTTCCCAGCCACCCCTGGGCTGCTGCTGCCCGTCTCTGAGAAGCCACGTTAGACATTGCTTCCAGTTGCTAATATGCCCTCCTCTCCCTCTGTGGCCCTGAAGTTGAACAGTGTCCTTCCCACTCCCCACCGTGGCCCTTAGAACTACATGCCCCATTACCTTCTCTCTCTGAGCCTTGGGTCTCTGTCTGTCTGGGTCCCTGGTCATTCTCCTGTAGCTGGTTTTGCATATAGACTCAGTGTCCTTAGTGGAGGGTCCTGTTGCAAGTCACTGTGCCCACCATGGTGTGCCATGTTCTCTATTGCTGGAAAGAATCATTGTGTGACCACCTTACCTGTCCATCATCTGTGTCGTGGTCACACAATGACCTCAACTCGGGGTGCTGTTAGCATGCCTGGTGACTCCCTCAGTCAATCAACAACTATCTCATTCTGCTCCAAATGGGGAGACTAACAGTACACATGAACTCCCATTACTGCCCCAGCCTCTTCTACTGTGACCCAGGGTGGACAGCACCCGCCTGACTCCCTTTCCAGACCAACTTGTCCTGAGCCCAGCCCTCAGGGGCCCTAAACAAAGGAGTAAAGAATTCAAGGCACCTGTGGTTCTGTAACCCTTACCTCGCCAAGCCCTGTCACTGTCACACGGGGCAGCAGATCTGAGGGTGTTCTTGCTACTGATAGAACAAGGACTGGTGTGCTCAGTTAAGAGAAAGGAAGTCACTGCTGCCTCAGGGCCACCCACTGCTGCACAGGGCCACTCAGATCCCAGTGACTGTGTCTGCTCAGTGAGCAGCCAGGATTTCAGTTAGATATGGGAAGTTGCGTTGAGGAAAAAGCAAATACTTCAACTACACGCCCATCCAGTTCACGCTGGCTGTTTGTAGTTTCAAAAAGGCCGGCAGAGGAGTGATGACAGGAAGCACCCATCCCCATCCCAACGGCCCTCCCTGAACTCCATCGTCCCCACGCTCAGAGTTACAGAGCATGGCCTCCTGCAAGCTCAGGTGCTGTTTGCAGAGCCCATGTGTATAGAATTCATCCATCTTTCAAGGCTGGATCAGGAAAACCTATGATTCATTGACCCAGCCCTCTCAGGTCACCTGAGTCTGTCACTTGCTTGTCACAGTCCCATGCAATCTCTGTGCTGAGCCTTTTGCCTTTAAAGCCAGGACCAGTTTGCAGTCTAGCTCTCTCTCTTCAGTTTCCTTGCTCTGTGTGAGATCTGCTCGTACTCCAAGTGCTGACATGCTAGCACAGCCTGCCCTGGCTACAGAGCAGACCTGTGCCTCTGTCTGGGTGCGTGCAACGCTTTGACTGCTTATAGTGCCTGTCCCTGTCAAGGGAAAATGTCCATGCTGACATTATCAGAACTTTGAGGGGCAAAACCTAATCGCTGACAGGCCGGTGAAGTGTGCTTTGTCACTCAAGCTCACCAGACTGACCATATCCTCCCATGCTCACCAGACCAACCATAGCCACCCATGCTCACCAGACTAACCACAGACACCCCAGCTCACCAGACTAGCCATAGCCTCTCATCCTCATCAAACTAACCATAGCCACACAAGCTCACCAAACTAACCATAGCCAACCATGCTCACCAGACCAACCATAGCCAACCATGCTCACCAGACCAACCATAGCCAACCATGCTCACCAGACTAACCATAGCCAACCATGCTCACCAGACTAACCATAGTCACACAAGCTCACCAGACTAACCACAGCCAACCATGCTCACCAGACTAACCATAGCCAACCATGCACACAGACTAACCATAGCCAACCATGCACACAGACTAACCATAGCCAACCATGCACACAGACTAACCACAGACACCCAAGCCCACCAGACCAACCATAACCAACCATGCTCACAGACTAACCAAACACAATAATGAAAGGCAGAAAAAGGAAATGTGACTGACGCGGCCACATTGAGAATAGAAACAGAGGCACTGTGAGCCCCAGCCCCAGTCCTGCTGTGAGGTTTAGGGTTAAGTGGAGGATGCGAGGTTTGCGTAAGTGAGCAGCCCTGCTCAAAGCGTGGTCCCGTCCATCACTGACCCAGTGATGTGCTTTGCTCCAGTCTGTCCTGGAAGGTGGCCTCACATTGTCAGAACTGTGTGAGAGAAAGCTCTCTTTGGGAGACAGACTCTCCCTAAAGCCAATGCCAGCGGTTGGAAGGGGATGTCCATCATGGCTGGGCCACAAAGCGCCTCTCTGGAATACCTTCACTCAGCTCTCTCGGGATGATTGTGATCTGACCGCCGAGCTTCCTCCTCCTTTAGAACCATGTGTATTGATGCGCTGGTCTGTAGCTTCAGACTCTGCCCCTTCTACAGCGTCCTCTCCCAGCCACATTAGCACGGCCTTGCCCAGGCAGAGCTCCTAGGTACCCAGAGAACCCACACTTCTTTGCAGAACCTCTTTCTTGGCTTCCAGTCTTTGCCCATTTGCCAGGCCTGTCTGACCATCCTTGGGTAGTGCCTGGGTCTCTCCACAGCTACCTTTGTATATATGGAAGCTATCCTTGTTCCCATGGAGGGTCCCTGTTTGGAGAACTCATCTCTCTCTGGGGCCCTGAGTCAGTCCATGCTTCATCAGACTATGGAAGGCGTGTGGGTTTCTAAAGCCCTCACCCCGGTAGCCAGTTTCACCACGCAGACCCTGTGTCTGTTTTTTTTTTTTTGTTTTTTGTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTGGTTCTTTTTTTAGGAGCTGGGGACCGAACCCAGGGCCTTGCGCCACTGAGCCAAATCCCCAGCCCCCTGTGTCTGTTTATATACATTGTTTCCAACTTTCTCAGACCTTTATGTAGCTGCTCCTCTTCCCTTGGGGTCAGACCCTGTCTGTCTGTACAACATTGAGCCCCATTGCCCCATTTCAAGAATTCACCCCTTTTTGCAGGGTCTGCCCCTGCTGACTGGACTGGTTCCTTTTATAAGAGTCTAATTTAGCACTATCTACAGTGACTGTCCCTGAGTCTGCAGGCCTTGGGTCTGTCTAGAATCTGCCTGCATGTTTCCTTTCAACCTTTTGATGTTTTTAGACAAGGTCTCCTGTAACCCCCAACTCCACTCTATAGCCCAGAGCGACCTTGAACCTCTCATGCCCCTGCCTCCACCTCCTGGGTGCCAGGATTAAAGCCGTGCACCACCATGCCAAGTTCTATGTGGTGCTGGGAGTCAAACCCGGGGCTTTATGCATGCTAGGCAAGCACTCTACCAACGGAACTACACTTCCAGCCCTTTGTGGCCAGTTCCTAACTCTCTGTCTAAAATGTTGCTACTAGCTGAAGGGCCCCCTCAGGCCAGAGAGCTCAGCCTGTTGTAAGAGTTTCCCCACAGACAAACCAGGTCTCCCTGCGCCCATCCACTGTGCCTGCCCTGGTTTGCTGAAGTTGCATTTTACATTCTATAATGAAGGTGTTTTGGAGAGCTTAGGTGTCAGGGTGGGGTGAAGGGATTCTCACTGGGAGCCAGAGGTTGACCTCCGACCTGTGAACTCTGAACTCTGCCTCTCTGCTTTGTATCTCCCTTACTCTAG
Seq C2 exon
CCCAGGATGGACAGCAACCAGGTCCTCCCAGCCATCAACAGCCACAGAGCCCTGCAAATATGGATTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]