HsaINT1046319 @ hg38
Intron Retention
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:37988059-37993732:+
Coord C1 exon
chr3:37988059-37988238
Coord A exon
chr3:37988239-37993586
Coord C2 exon
chr3:37993587-37993732
Length
5348 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
AGTCATGTTCTATAATGAAGTTG
3' ss Score
-0.18
Exon sequences
Seq C1 exon
GAGGGCGGGAAGGGCCCTCTGTGGGGCTGCCATTTTGGCTGGGACCTAAATGCAGTAAAGGAGCAGCTACGGGAATATAGAGAGTGGGGCTTCCAGGCAGAGAAGCCTGCAGTGCAAAGGTCTGCAGACAACGACCTGGGCGTCTTCAAGGGACACAAGGAATCATATTGCCAGAACACA
Seq A exon
GTAAGCCATGGGGAGAGTGATGGGAGAGGCAGCCGGGAACGGCCATTGAGAGTTTCATCCCAGTTTTAGTGGAAGCCACTGGAAGGTTTGGGGAGGGGGGTGATGTGAGCGGGTTTATGGTTAAATTCTGAGGTTGAATTTTCCCTCTAGTTAGTCAAAATCATAGAAAATAGAATGGTGGTTGCAAGGGGCTGGGGGCAATGGGGAGTCTATGTTTAATGGGTGCAGAGTTGCAGAGTTTCCGTTTTGTAAGATGAAAGAGTTCTGGAAATGGTGGCAGTGGTTGCACAACAATATGAGTGTCCTTAACACCACAGAACCGTATACTTAAAAGTGGATACAGGCCGGGCGTGGTGGCTTACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCCGGTGGATCGCTGGAGGTCAGGAGTTCGCAACCAGCCTGACCAACATAGTGAAACCCCGTCTCTACCAAAAATACAAAATTAGCCGGGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGGGACTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGCTGCAGTGAGCCAAGATCATGCCATTGCACTCCAGCCTCGGCAACAAGAGCAAAACTCTGTCTCAAATAAATACATAAATAAAAAGGGGATACAATGGTAAATTTTAAGTATATTTTACTACAATTTTTTAAATCTTGTGAAAAAAAGATTTTTTATATTTTACCACAATTTTTTTAAATCTTAGGAAAAAAGATCCCTCTGGCTACTGTGGTAGGATGGTCGTAGCGGCCAGGCAGACCCAGAGACACAGAGGGAGGCTGGCTCCGGAGCAGGCAGGAGGCGTGAGAGGGAGGGCCAGGCCCAGGATCCACCATGAACCAGCTGCCGACGGGCCAGTGGCTTGCGGGAGAGAGAAATCAGGGCAACTCCAGGTTTGGGGCCTAAGCACCCTCTGGATGTTCACACTGAACGTGTTCCTGGGGCTCAGAGAGGGTAGATCTGGGAGGGGCCTGAGGCGATGTTAAATGTGAGACCAAACGTGCTGGGAGAGATGTGACAGACGGAAGATGGAGACTTAGGCCGGGGCAAGGTTCGGGGGAGTTGGGTCAGGGAGACACTGGCGTTTCCATGCTATTTGCAGCCTTCAGACTGGAACTGGGAAGGAAACTGGAAAACAAACAGGAGTGAAGGCCCAAGCTCTGCTCCTGCTGCCATTTAGAGGCCTGAAGGAGACAGGTGGAGTGAGAGGGGAAGGAACAATGGTGACTGAACTGACTGCCGCTTGGTTGACAGCGGGCATTGGTGACTTAGGAAAGAGCCATTGCCAGGGAATTCAAGAACAAACAGAGCGGGTGGGCTGAGGGGAGATGGGGGAAGAGTCGGTGGGAAGAAGTGAGGACACAGAGTCTTCCTGGGCACAGAGACAAAAAGGGACAGGGAAACGGGTATGCACAGGTACAGTGGACACACTGCCACTGTCACAGACAGGGTCCCTGTCCCAAGTGGGGATCAGACAGACATGCCAGGATACAGGCACACACATGAGGTCGGACAGGCAATGGCACACATGGGGACGAGCCAAATGCCTGTGACACAGGCATCCCTTCACACACAGGGACCCTGCATTGTGTCTGTTAAACACAGTCACACACTAGCTGTAGGTCTTGCTGGACACAGACTGCCCCCGAGTCCCCAAGTCCCCAGACCCCTGTAACAGAGACCTTTGTGGGGTGAAGACTGAACACAGGGAGAGGGTCTTGGGCAGTGGGCAGGCTTTAGCAGCGTGGCTTTGATGGGATGGCCCACGCTGGCTGGGCCTTGGCTGGGACTGAGGCCCTAAGCCGCCAAGAGGAGGTTGTGCCCCTGGAGTTTCTGGAAGGCTCTGTTTGCAGCCCCTCCACCCCACAGTGAGAGAGAGAGAGTGGCAGTGGAGTGGCAGCTGAGGTGAGGGAGAGGTGTCTTCGCTGCAAGAGCTGGACTGGCCTCTCCCATGATGGGTATCAGGGTTCCCTGAGGAGGGCTGTGCCAGGCAGTGAGCTCACATTTGGGTAGGGACAGCAGAAATATCTAGAGGGAGCCCTGACCACCTTCCCCTCCTGAAGTGAGCTGGGTCTCACAGAGCCTGACCCCACAGCCCCCAGCCTTGGTCCTACTTCCTCCTAAAGTTTGCTGGAGTGGCCTGGCCCTCTTGGTCCAGGCGGAGCCCACCACTCCGGGTGAGGGATCAGGGGCCCATCTAGTACTCCAGAGAAGGAAATCCCAGTATCTTCCACACCCCACCTCTTAGCCCAGTCCAGGCCTCCATCCCCTGCTCTCTCTGGCCACTGGTACCCAGGCAGTGAGACCTGGGAGACTTAACCATAGCCCTGGGGAGGGCGCTGGTCCCGACGGCTTGCTCGATATTTGTTGACTGGCTGACTAAGTGAATGCCTAGCCCGCTGAGCACTGTGTGGTGGGGTGTGTCCTGCAGGGCAGGAGCTAGGATTGAGTTACAGTGGTGGGGACCAGGAGTAGGGAGGCAGAGACTGGCCCCGTGCCAGGCCTAGCACTGCCCACAGGCAGGGCGAAGGCGCGGGAGCAGTTTCCAGCAGGTAGGCCTGGGCAGAGAGTTGGGGGGCGGGGGTTTCCAGGGAACCAGTGGGGCAGAGTGGGCTATTCAAGTCAAGGGCATAGAGCATAGGGTCCCAGGGCTCAGGGCCACAGAGCCTCCGCGGCAGAATTGGGAGGCGGCAGCAGCCCAGCAGGTGAAAACACTGATGGGGCAGGGCAGCTGTGGCCGGCAGCCCAAGGGGAAGAAAGTGGCAGATTTTGTAGATGGGCAGGGAAGTCCGTGGCCCACAAATTCAGTGTGCCTGCCCCCAACCCTGGCCCCATCCTCCTTTCCCCTCACTCTAGAGGGCGGCACCACTCCCTGCTCCATGGAAACTGAGCAAGGTAATCTCGGGCTCCCTTCAAAGGTACCCACAAAAGAAGGAAGGGCTCCTGTAGGGAGAGAAAGAGGCACTGGAGGAGGGAGAAAGCGAGGAGAGAGGAGGCACCCAGGGACACGAGGGGCAGGGGGAGAGAAGAGGGGGTGTGTGAAGCGGGTAGGGAGTGCCCCGGGAAAGAGAGGGGAGCCTGGGGAAGAGAAGGAAAGACCTGGGGAGGAGGGTGGGGAGGGAGAGAGGGAGGGGTGTAGGGGAAGACAGGGAACCAGGAAAGGAGGAGGTGCCTGGGGAGGAAAAATGGGAGAAAAAGGGAAGGATCCCAGGGGAGAGGGGAAATCAGAGGGGAGAAAGAAGAACCAGGGGGAGGCAGGGGCACCCAGTGGGGACAGAGGGAAACCCTGGAAAAGCGGAGGCGTGGGGCATGGGGAGAGAAAGGGAAACCAGGGAAGGAATTGGGCATCCGGAAGAGAAAGGGGCCCTGAGTGGAGGAAGTGCACCCCCAGGGAAGAGAAGGAGGGCTTCTAGGAGAAGGGAGAGGACCAGGGATAGGAGGGTTCCCACTTGGGAAGGTGGTGAAAGGGAGTTCCCCAGAGGAAAGAGGGCAGGAGGGTTTGGGAGGCTGGAGGGGGCACTGTGGGGGGTTCCCCTGAGGAAAGAGGGCAGGAGGGCTTGGGAGGCTGGAGGTGGCACTGTGGGGAGGGAGGAGGCCCCCAATCTTTGAGCACCCATTCCTCCCTGGAGTCCAGGTGAAAGAGAATGAACACAGGTGCCATGCGAGTGCGACCTCAGCCCTGGCAGCTGAGGGCTTGGCTCTACGGGCTGGGGCTGGATATCAGACGGGCTCCCGGACCCCTGGGGGCGATGCTGCCTCTCCCAGTGACACCAGCCGAGTCCCAACTTTTTGGCTGCCAGTTTGACTTTCCAGTCCCCCATGTGCCCTGGTTGACACTGTTCTGAGGCCATCCAGTAGTCTTTCTGGCACTCTGTCACCATGTTGTACTCTTCCATGAGCTACAGCTCACAGTTTCTGTCTGCACCTCTGGTCACTGCCTGCCTGGGCCTCTGGTAACTGTCACTGGTCACTATTTCTGCCTATTACTCAGTGTCCTTCTACGGGGCCACCACTGGTGGACATCCTGCTTGTCACCCAATGTCCTCACGTTTTCTGTTGCTTGAGATCACCTTTTCATGGCCACTATGTCTGCCTGTCACTCATGTCATTGTCACACCAACAGGCCATCAACTGTGGCAACAGTTCTTGGGGCAATTAGGGTGCACGGACGGCTCCCTTCTCTATTCATTTTCACTCAGTCCAGTCGCAGGGCAGCACACTTCACTCATTCAACAAGTACTTACTGAGTACCTGCTGGGGGCCGGGCAGCTGGGATCCCACAGTAAACAACAAGACAAACCCCTGCCTTCAGGAATCTGCTGCTCTGGTGAGGGAGACCATAGCCAACAACCATCCTATGGTTTCCATAGGGTGTCGGGAGGAGCTGTGAGCTGTGACGGACCCAGCTCTAACCCCCTAGAAGGACAGCCCACTCTGCCCCTGCTCCCCTGCCCCACAGCCTCCTCCGCTCCCACATTTCTTTGGCTACATGTTGGGTGTTGCCACAGTGTACTGTGAACTCACCAGGGCCAAACCAGGGGCCCTGACAAAGGTGTAAGGAATGTGAGCCACTCTATGACACCTATTGTGCCACACCTGATTCTGTAACTCTGTCCCCTCACCTTGTTCTGCCTGGAGCCAAGGGTGTTCCTGCTATTGATAAGACACAGTGGGAGTGGAGGGGGAGGAGGGAAGGACTAACACACCAGGGTCACCCTGAGTGAGAGATTCAGAAAGAAGTGACTTTTGGACCAAACCTCACACACAGGTTTCTGAAGGAGTGGTGCAGGGAAGCCTCAGGTAATTGAATATGAAGTGCCAAGACATAACAAAATCGACAGAAGTGAGGGTCCCTTCCTTCCCCCAGGTACTTCTCATTCCATGTCACTGTCATTCACTGCCCTCTCATTCTCTCCCTCTCTGCACGCGCAGAACCACAGAGCACAGACTCGAGCAAGCTAAATCGCTATTTGCAGAGCCTGTGGCTGTTTGCAGAGCCTGTGTTTATACAGAGTTCAGCTCTGTTTCAAGAATTTGTCAGCTGAAGCGGGAAGATCACTTGAACCCAGAAGGTGGAGGTTGCAGTGAAGTGTGTTCGAATCATGCACTGCAGGCTAGGGTGGCAGAGCAAGACCCTGTCTCGAAAAAACTGGAAAAAAAAATTGTCAAGTGTTTATGCCTAATCTGCCCAACCCACTCATATCAGCTGAGCCTGTCACTTGCTGCAGAATCTGAGTCTTCATAGTCTGTGTGCTGACATTTGTGTGTTTACAGAGCCCTCCTAATAAAAGTCATGTTCTATAATGAAG
Seq C2 exon
TTGTACAGGTAGCCAGGTGTCGGTCTCCAGCCTGAGAACTCTGGCTGTTGTTCCTTGTGTCGTCCCATATTCCTGCCTGGCCTGCGATGGACATCAGCAAGGGCCTCCCAGGCATGCAGGGAGGCCTCCACATATGGATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059:ENST00000283713:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains