BtaINT0160234 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008064 | VPS37C
Description
vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr29:38036439-38037404:-
Coord C1 exon
chr29:38037233-38037404
Coord A exon
chr29:38036522-38037232
Coord C2 exon
chr29:38036439-38036521
Length
711 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
3' ss Seq
CTTTCTGCCCTCCCTTCCAGAGA
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTCCAGGATCTGCAGCTGGAGCGGGAGATGGCGCTGGCCACCAACCGCAGCCTGGCCGAACGGAACCTGGAGTTCCAGGGTCCACTGGAGATCAGCCGCTCAAACCTCTCAGACAAGTACCAGGAGCTCCGGAAGCTGGTGGAGCGGTACCAGGAGCAGAAGGCGAAGCTGG
Seq A exon
GTAGGCGGCCAGCCCCGGGAATGTGCACCAGGGGTGCCTCTCTTCACTCAGGGTCCATCTCTTCACTCAGGGTCCCTGTTCCCCATGGAGCTAGGGGAGCTGCTGGAATCTCCTAGAAAAACAGATTCCCTCTCCCTCCCCAGGACAGGAAGGGGCCAGCAGTTACTGCAGGTTACCACATCCCCAGCCTGGCTAAGTGCTTTAGCAGCCATCTAAGGGTAGGTCCTGTCATTGTTCTCGTGCCGTAGATGAGAGGAGTGAGACTCAGAGAGATGCCGGAGCTTGGCCAGGGCTCCATGGCTACATAGAGGTGGAGCTGGGATTTGAATCTGGAGAGCCTGGTCTGGGCTTTCTGTGTCCCAGCCTGCTGTCTGAGGAGGTGAGGGGCATCTGGTCCTCAAGGTGGAGGACTTGATGCTCAAAGTAACCCCCTGGGCAGATTAGGCTGGGTGGGCAGAGCCTGAGGCCTCTTGCTTTTCCAGCCAGCATGGGGAGCTGGGGATCCAGGGAGCCAGGGTCTGTTCACTGAGCTCCTGTCAGCTCAGGAAGCTGACCAGAGGGAACCGACAGAAGGGAGTTCTGCTGAGACCCCAGGGCAGAGGCAGGTTCCCTGGCACATCGGACTCTCCAGGACCCTTGCCGAAACCTCGGCCTCTCTCACAGCATCAAGAGGCACTTTTGAAATGTTAACCTTTCTGCCCTCCCTTCCAG
Seq C2 exon
AGAAGTTCTCCTCAGCACTGCAGCTAGGGACCTTGTTGGACCTTCTGCAGATTGAAAGCATGAAGATTGAAGAAGAGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008064:ENSBTAT00000010607:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(38.0=100)
A:
NA
C2:
PF072008=Mod_r=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGGATCTGCAGCTGGAG
R:
TCGGACTCTTCTTCAATCTTCATGC
Band lengths:
254-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]