HsaINT0180820 @ hg38
Intron Retention
Gene
ENSG00000167987 | VPS37C
Description
VPS37C, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:26097]
Coordinates
chr11:61133255-61134207:-
Coord C1 exon
chr11:61134036-61134207
Coord A exon
chr11:61133338-61134035
Coord C2 exon
chr11:61133255-61133337
Length
698 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
3' ss Seq
CGTTCTGCCCTCCCTTCCAGAGA
3' ss Score
11.27
Exon sequences
Seq C1 exon
GTCCAGGACCTACAGCTGGAACGGGAGATGGCACTGGCCACCAACCGGAGCCTGGCAGAGCGGAACTTGGAGTTCCAGGGTCCCCTGGAGATCAGCCGCTCAAACCTCTCGGATAGATACCAGGAGCTCCGGAAGCTCGTGGAGCGGTGCCAGGAGCAGAAGGCAAAGCTGG
Seq A exon
GTAGGGTGGCTCCTCTGTGAACTCAGGGTCCCCATTCAGGGTTGGACGGAGGCCCACCGTGTTCCCAGCCCTGTGCTAAGTGCTTTATGTATATTTTTTCACAACAGCCATAGAAGGGTGGGTACTGTTGTTACTCCATTTTATAGGTAAGAAAAATGAGGCTCAGAGAGATTCAATAACTTGACTAAGGTCACCCAGCTTAGAAATAGGTGGAATTGGGATTTGAATTGAGACAGCCTGCATCCTTTGCTGCTGCCGTTACCCTTGGCAGCTCAGCTTCTATGCTTTACTGAGCTGTTCCTGAGCTGCTCTGGGCTCTCTGTGTCCCAGGACCTGTCACCTTTGAAGGTGGGAGGGTGGTCCTTGTCTTGATGGTGAGAAAGCTTGACACTCAGGTTAGGTAACTCCCCTTGCTGGCAGGCAGAACTGGGTCAGTTGGGCTCTGAAGCCCAAGTCATTTCCCATCCCAGGATGGCGTAGGGTAGGCTTGGCCAAGGTCTAGGCTAGGTTCATTCGGGCCCTTCTCTGCTCAGGAAGGAACTGGACCAAAAGTGCTCATCAAGCCCACCCAGAAGGACCCTTTGGTGGACCCTGCTGTGGTGGCTGGGCCTGGATGCACACAGAGGGTATGCAAAGTGCCTTTAACACTGAATCAGGAAGCACTTTTCAAATGTCAGTCGTTCTGCCCTCCCTTCCAG
Seq C2 exon
AGAAATTTTCTTCAGCACTGCAGCCAGGGACCTTGTTAGACCTTCTGCAGGTGGAAGGCATGAAGATCGAAGAAGAGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167987:ENST00000301765:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(38.0=100)
A:
NA
C2:
PF072008=Mod_r=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGGACCTACAGCTGGAA
R:
TCGGACTCTTCTTCGATCTTCA
Band lengths:
254-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains