BtaINT0160598 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35040436-35045302:+
Coord C1 exon
chr26:35040436-35041008
Coord A exon
chr26:35041009-35044750
Coord C2 exon
chr26:35044751-35045302
Length
3742 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCGCTTTGCTTATTCTACAGGCT
3' ss Score
7.87
Exon sequences
Seq C1 exon
CTCTGAATCTGAGCCTGGAGTGCAGAGTGGACGTCCTGTTCCTGCTGGCCAGCTCAGCAGACGCCACCCTGGAGGGCTTCCAGCGGGCCAAGGCCTTCGTGAAGCGGTTTGTGCGGGCAGCGCTGACCCGAGACTCCCAAGCGCGCGTGGGTGTGGCCCTCTACGGCGCGAAGCTGACCGTGGCCGTGCCAGTGGGCGAGTATCAGGATGTGCCAGACCTGATTTGGAGCCTCGACGGCCTGCCCTTCGACGGTGGCGCCACTCTGACGGGCCGGGCCCTACGGCAGGTGGCAGAGCGCGGCTTCGGGAGTGCCCCCAGGACAGGCCTGGACCAGCCTCGACGGGCGGTGGTCCTGATGACCGAGGCGCGCTCCCAGGATGAGGTGGCCGGCCCGGCGGGCTTCGCGAGGGCCCGGCAGCTGCTCCTGCTGGGTGTGGGCAGCGAGGACGTGCGGGCGGAACTGGAGATGATCACTGGCGGCCCGGAGCGCGTGCTGACCTACACCAGCCCACAGGACCTATTCGACCAAATCCCAAAACTTCAGGGCAAACTGTGCAGCCGGCCACGCCCAG
Seq A exon
GTAGGGACCATCCCCACACCCATGCCAGCGGCGGGCCAGCCGGCCAGGGGTAGAACCTTCCACGTTTTGGTAGGGATTTAACCAGGGCCTCTGGTGCAGGCTGGAGCCACAGCCCCACTTTATTTTTTTCATAAACTAGCCTTGTGATGAGTAACTTCTCAGTTTTGTTGTTGTTTAGTTGCTAAGTCATGTCTGACTCTTTGCAACCCCGTGGATCCTCTGTCCTCCACTGTCTCCCAGAGTTTGCTCAAATTCATGTCCCCGGAGTTGTGATGCTGTCTAATCTTCTCATTTTTCTGGTCACCACAATCTGGCAAATAGTAGCACCTCCTGAGGGGCTTTTATGAGGATTACTTAGGGCGAGCAAGATGCACACTAGTGCAGAGTAAGCTCAGAGTGTGCACTCAGAATTGCAGGCATTGCTGTTTATTAATTGTTATAGTTAATAAGGAGCTCTGAATCTACTAAGTGTAACTCTAGAACAGCAGCTTCCCAGTTTCTTTTTGGCAAGAAAGAAATGCATTCCCACTACACACATGTGCCTGTACAAGCATAAACGTCTAGAACAAGCCAAGCCTTTCCTGAAATGCTACTTGTCATTTCTACCTGAGATGCGTTCTGACATCATTCTGTTCTATGACCCATGTTGATTTCCATGACCTGCCACTAGAGGGTGCCCTGGAGAACAGAACCTGGGAGTAGATATCCCCATCAGGGGTGGGGGCCTGGCCCATGGTCAGCGACAGGAGTAGGTGAAACACACCCTCCGTAGGGCTCCAGACTTCTCTAAAGAAGCTGCGTGTGGATTTCAGCTCCTCAGTCCCAGGTGTCACTCTCACCAGTGGTGAGACATTCCCTCCTGCTGTGGGAAGGACAGGGCTCTGCCTGCCCACCTCCACTGTGCCCCTCCAGTCTTATCTTCCCTTGGCAGCCAGAGGATTTTTAAAAAAATAGTTTTAGATTCACAGAAAAACTGTGACAATGGTAGAGTTCACTTGTGTTCCATCCCCAGTGTCCCTCTTGTAAGATGTTAACCAGGTACAGTTATCACAATTAATGAACCAACATTGATGTTGTTCAGTCGCTCAGTTGTGTCTGACCCTTTGCAACCTCATGGACTCTAGCACGCCAGGCTTCCCTGTCCTTCACCATCTCCTGGACTTTGCTCAGTCTCATGTCCACTGAGTCAGTGACGCCATCCAACCATCTCATCCTCTGGCGCCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCATCCATGTCTTTTCTAATAAGTTGGCTCTTGCCATCAGGTGGCCAAAGTATTGGAACTTCAACTTCATCAGTCCTTCCAATGACTATTCAGGACTGATTTTCTTTAGGATTGATTGGTTTGATCACCTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAGCACTGCAATTCAAAAGCATCAAGTCTTTGGTGCTTAGCCTTTTTTATGGTCCAACTCAGACATTTGTACATGACTACTGGAAAAACTGTAGCTTTGACTATCTGGACCTTTGTCAGCAAAGTGATATCTTTGCTTTTTAATATGATGTCTGGGTATGTCATAGCTTTCCTTCCAAGGAGCATCTTTTAATTTCATGGCTGCATTCACTTGTCTGCTGGAGCCCAAGAAAATAAAATCTGTCACTGTTTCCACTTTTCCCCTTCTATCTGCCATGAAATGATGGGGCTGAGTGCCATGATCTTAGGTTTTTTGAGTTTTAAGGCAGCTTTTTCACTCTCCTCTTTCACCCTCATCAAGAGGCTCTTTAGTTGCTCTTTGCTTTCTGCCATTAGGGTGGTATCAGAATATATGAGGTTGTTGCTGTTTCTCCCAGTAATTTCAGTTTGTAATTCATCCAGCCTGGCATTTCTCTTGATGTACTCTAGTAGCCTATAGGTTAAATAAGCAGGGTGACAATATATAGCTTTGATGTACTCCTTTCCCAATTTGGAACCAGTCAGTTGTTCCATGTCTGGTTCTAACTGTTGCTTCTTGACCTGCATACAGGTTTCTTAGCAGGCAGGTAGAGTGGTCTGGTATTCCCATCTCTTTAAGAATTTCCCACAGTTTGTTGTGATCCACATAGTCAAAGGCTTTAGTGTAGTCAATGAAACAGATGTTTTTCTGGAATTTCCTAGCTTTCTCTATGATCCAGTGAATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAACCCATCTTGTACATCTGAAAGTTCTCGGTTCAGGTACTGCTGAAGACTAGCCTGAAGGATTTTGAGTATTACCTTGCTAGCATGCAAAATGAGTGCAGTTGTACAGTTGTTTGAACATTCTTTGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTACTGTGGCCACTGAGTTTTCCAAATTTGCTGCTATACTGAGTGCAGCACTTTAACAGCATCATCTTTTAGGATTTGAAATAGCTCAGCTGGAATTCCATCACTTCCACTAGCTTTATTGGTAGTAATGCTTCCTAAGGCCCATTTTACTTCACACACCAAGATGTCTGGCTCTAGGTGAGTACCCACACCATCGTGGTTATCCAGGTCATTAAGACCTTTTTTGTATAGTTTTTCTGTGTATTCTTGCCACCTCTTAATCTCTTTGCTTCTGTTAGCTCCTTGCCATTTCTGTCCTTTATTGTGCCCATTTTTGCATGAAATGTTCCCTTGGTATCTCCAATATTCTTGGAAAGGTCTCTAGTCTTTCCCAGTCTATTGTTTATTTCTTTGCATTGTTCACTTAAGAAGGCCTTCTTATCTCCCTTTGCTATTCTCTACAACTCTGGATTCAGTTGGGTATATCTTTCCTTTTCTCCTTCACTTTTTGCTTCTTTTCTCAGCTGTTTGTAAAGCCTCCTCAGACAACTATTTTGCCTTCTTGCATTTCTTTTTCTTGGGGATGGTTTTGGTCACTGCCTCCTGTACAACGATACAAACCTCTGTGCATAGTTGGTCATTATTTATTACAGTCTGCACTTTATTCCAACTGCCTTAGTTGTTACCTCATGTCTTTTTTCTGTTCCAAGGATCCCATCCAGGATACATTTTACATTTAGTCTTCCTGTCTTCTTAGACTCCTCTTGGCTCTGATGGTTTCTCAGACTCTTCTTATGCTAGAGTTGTTTTAAAAAACCAGTAAATCAGATCCTCTTACTGCATACTTTACTCCTGGTGGGCTACAGTCCATGGGGTCACAAGAATCGGACACAACTTAGCGACTAAACCACCCCTGCCATACGGTTCATGGCACCTGGGGTATAGATTGAGCCTCAGAGCCCCATGGCTTACAGACAGTAGTCGTTTATTCCTCTCCCATCACAGTTCAGAGGTAAGCAGCCTGGGCCGGCAGGATGGTTCAGCTGTCTGCTAACTCCAGGGCTGCTGTTTCTCAGACAGCAGGAAGAGGGCAGAGGGGAAGTGGAAGGCAAGCAGCTTGCTTTCGGGGACAGAACTTAGAAATTGCAGTTACTTTCCATTACATCCCATCGGATAGAACTATCACATGGCCGCACCCAGCTGCCAGCAGGGAGGGTAGGAGTATGGTCCAGCTGAGCCTTCGTGTGTCCTGCTTTTCTTCCAGGAGAGGGTGGAGGCCGGATGCTGCAGTGGAGACCGGCTGACCTGGGCTCTGATCACCCCAGAGCAGCACCCTCCACTGCCCGGCTACCCCCTAAGGGCCGCTTTGCTTATTCTACAG
Seq C2 exon
GCTGCCAGGCCCAGTCGCTGGACCTGGTCTTCATGCTGGACGCCTCGGTCTCAGTGGGGCCCGAGAACTTCGCCCAGATGCAGAGCTTCGTGAGAAGCTGTGTCCTCCGGTTTGACGTGAACCCCGATGTGACGCAGATCGGTCTGGTGGTGTACGGCAGCCGTGTCCAGACAGCCTTCGGGCTGGACACCCACCTCAGCCGTGCTGCAGTGCTGCGGGCCCTGAGCCAGGCCCCCTACCTGGGAGGGGTGGGCTCAGCAGGCACGGCCTTGCTGCACATCTATGACAAGGTGATGACGGTCCAGGGCGGTGCCCGGCCTGGCGTCCCCAAGGCGGTGGTGGTGGTCACGGGTGGGAGCGGGGTGGAGGACGCGGCTGTCCCGGCCCAGAAGCTGAGGGACAACGGCGTCTCGGTCTTGGTGGTGGGTGTGGGGCCCGTCCTGAGGGAGGCACTGTGGAGGCTTGCGGGTCCCCGTGACGCCCTGATCCACGCAGCAGCCTATGCAGACCTGAGTCACCACCAGGATGCACTCATCGAGTGGATATGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860:ENSBTAT00000009011:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=89.1)
A:
NA
C2:
PF0009223=VWA=WD(100=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]