GgaINT0044701 @ galGal3
Intron Retention
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29206481-29207916:+
Coord C1 exon
chr6:29206481-29207062
Coord A exon
chr6:29207063-29207364
Coord C2 exon
chr6:29207365-29207916
Length
302 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTTTGCACTCTTTTATCTAGGCT
3' ss Score
7.5
Exon sequences
Seq C1 exon
CACCAAAGCTGAGCCTTGAGTGTGGTGTGGACCTCCTTTTCCTGATGGACAGCTCAGCAGGGGTCACACTGGAGGGATTCCTGCGCTATAAGGCGTTCCTCAAGAGGTTCCTTCAAGCAGTGATGGGCCGGGACTCGCCAGCAAACGTGGGGGTGGCCCAGTACGATACCAGCATCAGGATACCCATTGAAGTAGGACAGCACAAGGATGTGTTTGGTCTCATGAAGAGCATTGATGCTTTGAATTTCAGCGGGGGAGGAACCCTGACGGGCAGAGCCCTGCGGTACGTTGCTCAGCATGGTTTTAGGAGAACCCCGGTGTTTGCAGATGTGCTGGATGACCTCCCACGCGTGGTTGTCTTGCTCACTGACTCCAAGTCCCAAGACCCAGTGGCAGAAGCTGCCAAGTATGCAAGGGACAGAGATCTGTTGTTGATTGGTGTAGGCAGCAGCTTTGTGAGGGCAGAGCTGGCTGAAGTGACTGGCAACCCAAAGCAGACCGTTGTCTACTCAGACCCCCAGGATTTGTTCAACAGGATCCCAGAGCTGCAAAGGAGAATTTGCAGTGTGAACAGTCCTGAAG
Seq A exon
GTAAGAGAGTGATGTAGGGGATGCAGAAGTTTGTCAAACCAAGAGGTTTTCTGAGCTCCACTGGGGTGTAGGGGAGGACAGAAGGATGAATGTCCTTGTTTTACTTGTGTCAGTCACAGGTTGAGGCACTAAGCTTCCATTGTTGCTCTTATGGGGCTGTATCTGTTGATGTTAAAAGGCCTTATATCACCCTTCGCAGTCAGCGGTGGGCAGTAATGAATTTGGCTCACAGTTTGTTCCCCTGGTTTTTCTGGAATACATCTATATACTGAAAAACACTGTGTTTGCACTCTTTTATCTAG
Seq C2 exon
GCTGCCAGGTGCAGTCTCTTGATTTGGTGTTTGCAGTGGATGCCTCAGCTGGAGTTGGCCTGGCGAATTTTCTGCAGCTGAGGGACTTTGTCAGGAGCAGCTCTTGGCAATTCACCATCAACCGGGATGTCACCCAAATTGCCCTTGTGGCCTATGGTAGCAGAGCTCGCACCGTGTTCGCTTTGGACACCTACACAAACAATTCAGCTCTCCTCCAAGCCATCAACCAGATGCCTTTCCTTGGGGACGTGGCCTCTGCCAGCAGTGCCTTACTCCACATTCACAGTGATGTGATGACGGTACAGAAAGGAGCAAGGCCTGGTGTCAGCAAGGTGGTGGTGCTGCTCACAAATGGAGGTGGCATGGAGGATGCAGCTGCCCCGGCTCGGCACCTGAGAGACAACGGTGTCATGGTGTTTGTGGTTGTCATTGGGGATGCAGAGAGGGACACACTGCTGAGGGTTGCTGGGTCTCCCAGTTACCTGGTGCACATCTCTTCCTATGAAGATCTGCAGCGTTACCAAGACCTCATCACTGAAAGAATCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980:ENSGALT00000033088:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=88.7)
A:
NA
C2:
PF0009223=VWA=WD(100=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGGCTGAAGTGACTG
R:
GTTGATGGCTTGGAGGAGAGC
Band lengths:
347-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]