HsaINT0181152 @ hg19
Intron Retention
Gene
ENSG00000165816 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:24709]
Coordinates
chr10:116045698-116049751:+
Coord C1 exon
chr10:116045698-116046270
Coord A exon
chr10:116046271-116048696
Coord C2 exon
chr10:116048697-116049751
Length
2426 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCTCTGCTTGCTCCTGCAGGGT
3' ss Score
12.21
Exon sequences
Seq C1 exon
CCCTGAAGCTGAGCCTGGAATGCAGGGTCGACCTCCTCTTCCTGCTGGACAGCTCTGCGGGCACCACTCTGGACGGCTTCCTGCGGGCCAAAGTCTTCGTGAAGCGGTTTGTGCGGGCCGTGCTGAGCGAGGACTCTCGGGCCCGAGTGGGTGTGGCCACATACAGCAGGGAGCTGCTGGTGGCGGTGCCTGTGGGGGAGTACCAGGATGTGCCTGACCTGGTCTGGAGCCTCGATGGCATTCCCTTCCGTGGTGGCCCCACCCTGACGGGCAGTGCCTTGCGGCAGGCGGCAGAGCGTGGCTTCGGGAGCGCCACCAGGACAGGCCAGGACCGGCCACGTAGAGTGGTGGTTTTGCTCACTGAGTCACACTCCGAGGATGAGGTTGCGGGCCCAGCGCGTCACGCAAGGGCGCGAGAGCTGCTCCTGCTGGGTGTAGGCAGTGAGGCCGTGCGGGCAGAGCTGGAGGAGATCACAGGCAGCCCAAAGCATGTGATGGTCTACTCGGATCCTCAGGATCTGTTCAACCAAATCCCTGAGCTGCAGGGGAAGCTGTGCAGCCGGCAGCGGCCAG
Seq A exon
GTAAGGTCCCAGTGCCTGACCCAGGACCGCTGGTCAGTGGGCGGGTCCTTCCTCCTTTTGGCCACCACCTAACCATCATTTTCTGCCAGTGCCTCTTCTAGGGGCTGAAACCACAGCCCCACTCTTTCAGGCACCAGTCACATAAATAATTTTCAGTTTACCTGTCAACAAAATGGGACTAATAGTAGTACCTCCTGAGAGATCTTTAGTGAGAATTAGGTAAGATGGGCAGTGTACATGCTTAGTACAGAGTAAGCACTCAGCAAACTCTAGGTGTTGCTGTTATCATTCTTAATCACGATTTTATTGTTGTTGTTACTAAGAGCTCTGAATCTACTAAGCAGGCTCCAGAGCAGCAGCTTCCCAGCTCCTTTGATGGCAATCCACAGAAAAGTGTGTTCCTGGTGCACACATGCACATGTATGCACACATACACACACGGATGCATGTGCATGCACACGCGCTGGTGCAGCCACACACAACTGAAACAAACGCTTCCTGAGAGGATACTTACCCTGTCTACTTGGGATGCATTCTGACATTTTTCTCTTCTGTTCTGTTTTGCAAGCCATGAAGCTGATTTTTTATGACCCCTATTGGAAGGCACTCTAGAGAACACTGTCCCCACGCAGAGGCCTGGCCCATGGCCAGAGATGTAGTAGCTGAAACACGTCTTTTTTTTCTTTTGAGACAGGGTCTTGCTCTGTTACCCAGGCTGGAATGCAGTGGCACGATCATAGCTCACTGCAGCCTTGAACTCCTGGGCTCACGTGATCCTTCCACCTCAGCCTCCAGAATAGCCAGGACTACAGGTGCACACCACCATGCCCAGCTAATTGTTTTATTTTTTAGAGAGATGTGGTCTTGCTATGTTGCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAATCCACCCACCTCAGCCTCCCAAAGTGGAGGGATTACAGGCTTGAGTGAAATGTAAGCCTTTATAGGGCTCCTGGAGTTCTCCCCTTGGTAGGTGGGCATGGGAAGCTACAGATGTGATTCTGCTTCTCAGCCCTGATGCCACCACTCTCCCCAAGGCGAGAGGCTTTCCCTCCTGTAAGGCGGAAGGACAGGGATTGGCTGCCCACTCCCACCCTGCCCCTCCAGGCTGGTCTAAGTGCTTTTGTTCTGCTGCTTTGTTTGGTTGGATTTTTTAAAAAAAATAATAGTTGTAGATTTATAGGAAAAAATAATTGACAATAGTGGAGAGTTCCCTATACCCCACACCCAGTTTCCCCTCCTATTAACACCTTGCATTAGTATGGCACAGTGTTATCATTAATGAACCAGTATTGATACATCATTATTTAGTGAATCCATGCTTATTTATATTTGTTTAGTTTTTACCTAATGTCTTTTTTGTGTTCCAGAATCCCATCCAGGACCCCACAGTACATGTAGTCAGCCGCCTTCCCCGTAGCTGTGATAGTTTCTCAGACGTTCCTGGTGTGGGAGTGGTTTTAAAAACCAGTAATCAGAGCATCAGCTCCTCTAACTCCATACTTAGAATTTCCAGTGGTTCCCCTTTGCACTTGGAATAAAACCCAAACTCCTTCCCCTGGCTTCTGAGAGCTCCCTGTGGCCTGGTCCCCACAGGCCTCTCTGCATCCCCTGCACAGGAGAGGCCTTCTGGCTCATACTTACTTGTCTTTCAGTTCTTAGGTGAAATGTCACCTCCCCAGAGAAGCTCTGACCCCTTCTCCCAGTCTTGTTATGTTCCCCTACTGGTCTCTCTCGAAGTCCCCTGCTTTTCCCTCCACGCTGCCGACATCATTTGTAATTCTATGTTCATTTCATGTCTGTTCCCCTAGACTGTCAGCCTGTTGACAGCAGGCATGGGCCCATTTTGTCCATACAGCATCTAATTAGTGCCCTGCATACTGGGGATGGATGAAGGCACAGGTGAAGATGTTGTCACAAAGGGTTGCCCACAAACCCAAACCCCATGGGTTACATAAGACAGGAACTTATTTCTCTCACATACAGTTCAGAGGTGAGTGGCCCGGGCCAGCAGGGCTTGGTCATCTTATGGCTTCCACCTTGAGGTCCAAGGTCACCATTTCTCAGCCAGCAGGAAGGGGGAGAGGGGAAGTGGAAGGTAAGCAGCTTCCAGCTGCATGAGTTTGAAATTGATCACGTCCGTCAGATAGAACTTAGACACGTGGCCACCCTAGCTGCCAGGAAGTCTGGGAAATGTGGTCTGGCAGGCACTCATCTTCCTGCTAATATTCTAGGAAAGTGCTGTTCTGTGGCTAAAAGGAAGACATAGAGGGTGTATTCTGCAGTGAACAGAGCACCCTGGCTGACCTTGGTCCTACCCAACCTGGCAGTCCCTGGGTCCCGTCGAGGGGCTCTGACTGGCACATCCACTGCTGAAGCCCCTCTGCTTGCTCCTGCAG
Seq C2 exon
GGTGCCGGACACAAGCCCTGGACCTCGTCTTCATGTTGGACACCTCTGCCTCAGTAGGGCCCGAGAATTTTGCTCAGATGCAGAGCTTTGTGAGAAGCTGTGCCCTCCAGTTTGAGGTGAACCCTGACGTGACACAGGTCGGCCTGGTGGTGTATGGCAGCCAGGTGCAGACTGCCTTCGGGCTGGACACCAAACCCACCCGGGCTGCGATGCTGCGGGCCATTAGCCAGGCCCCCTACCTAGGTGGGGTGGGCTCAGCCGGCACCGCCCTGCTGCACATCTATGACAAAGTGATGACCGTCCAGAGGGGTGCCCGGCCTGGTGTCCCCAAAGCTGTGGTGGTGCTCACAGGCGGGAGAGGCGCAGAGGATGCAGCCGTTCCTGCCCAGAAGCTGAGGAACAATGGCATCTCTGTCTTGGTCGTGGGCGTGGGGCCTGTCCTAAGTGAGGGTCTGCGGAGGCTTGCAGGTCCCCGGGATTCCCTGATCCACGTGGCAGCTTACGCCGACCTGCGGTACCACCAGGACGTGCTCATTGAGTGGCTGTGTGGAGGTGAGTGGGGGAATCCACACCCTCAGGGCTGCCCCCATGGCAGGCCCTCAGCCTGAGCCTTCACATACATCATGACGAGGATGGCAGCTCTTCCCAGCTACTGAGCACTTGCTTCCCAAGTGCCAGGTTCTGTGCTAAACCCCATGCTCACATAAAATCCTACAGTAGGCATAACCATCCTATTTGACATTTAAGGTACAGAAAGTTTAACTAACATAGATAACTCCCCCCAAACTTGAGAATTTATGCATTCCCTTTAAACAGAACACACTTTTAGAATATCCACAAGCTTCCTAAGGGTCTAAAGATCCCACATTCACACTGACTTGGGCAGTGACAGAGCCCAGAGCAAACAGGGCCAGGCCAGCCCAAATCCAGTGACCTCCTCTTCACCTTCTTAAAAGAGACAGGAGAATCACTTGAACCCGGGAGGTGGAGGTTGTGGTGAGCCAAGATCGCGCCATTGTACTCCAGCCTGGGCAACAAGAGCAAGATTCTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165816-VWA2:NM_198496:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=89.1)
A:
NA
C2:
PF0009223=VWA=WD(100=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)