BtaINT0161628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047031 | WDR5
Description
Bos taurus WD repeat domain 5 (WDR5), mRNA. [Source:RefSeq mRNA;Acc:NM_001105475]
Coordinates
chr11:104937855-104938197:+
Coord C1 exon
chr11:104937855-104937888
Coord A exon
chr11:104937889-104938122
Coord C2 exon
chr11:104938123-104938197
Length
234 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GGCGGCCATGGCTGTTTCAGTGC
3' ss Score
5.17
Exon sequences
Seq C1 exon
CACGCTGAAGCTCTGGGACTACAGCAAAGGCAAG
Seq A exon
GTGGGTGACGGGGCAGGGTCCCCGGGCTCCTCAGGGTCCTGGGCTGTGGCCGCAGGGCACAAAGTGCGACTTTGTGGAGTTGGTTTGGTGCAAATGTCCCCACGATGCGGGTTAAACTCGGCCTGGGTGGGTTGTGGGTGGGGCTCAAGGTGCTCACAGAGCCGTCCAGTCGTGGCTGGGGGCCACCGGCGGTGCAGGGCGGCCCTGACTGAGCGGCGGCCATGGCTGTTTCAG
Seq C2 exon
TGCCTGAAGACGTACACGGGCCACAAGAACGAGAAGTACTGCATATTCGCCAACTTCTCCGTCACCGGGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047031:ENSBTAT00000066090:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(15.0=50.0),PF0040027=WD40=PU(2.4=8.3)
A:
NA
C2:
PF0040027=WD40=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development