RnoINT0165060 @ rn6
Intron Retention
Gene
ENSRNOG00000008212 | Wdr5
Description
WD repeat domain 5 [Source:RGD Symbol;Acc:1305159]
Coordinates
chr3:6077120-6077639:+
Coord C1 exon
chr3:6077120-6077153
Coord A exon
chr3:6077154-6077564
Coord C2 exon
chr3:6077565-6077639
Length
411 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCACACACTCACCTTTTCAGTGC
3' ss Score
6.16
Exon sequences
Seq C1 exon
CACACTGAAGCTCTGGGACTACAGCAAAGGGAAG
Seq A exon
GTGAGCTTCAGGCATGTGGCTTGTATGGCCTGCATGCCAGTCCCAGGTACCAGGTTGAGGGTGGTGTAGCTGACCCATGAGTTGTAGCAGGAGCGGCTCAGCCATCTTATTTGATGAGAGAGAATGGCACAGCTCCCTTTAAAGACATGTTTTCTGAAGGACTAATCTGCAGGTCCAAGTCTGGGCCTTGTGTATGTCTAGAATATTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTAGAATATTTTTAGAATATGTTCATGCTGTGGTTGATGTGTAATACCCAGAATTTGGAATCCTCTGGAATGAAAGCTAACCGTAAGTGCTAACAGCACACACTCACCTTTTCAG
Seq C2 exon
TGCCTGAAGACATACACCGGCCACAAGAATGAGAAGTACTGCATATTTGCCAACTTCTCCGTGACAGGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008212:ENSRNOT00000011556:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(15.0=50.0),PF0040027=WD40=PU(2.4=8.3)
A:
NA
C2:
PF0040027=WD40=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]