BtaINT0162183 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001585 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:HGNC:12736]
Coordinates
chr2:22283729-22284782:+
Coord C1 exon
chr2:22283729-22283944
Coord A exon
chr2:22283945-22284668
Coord C2 exon
chr2:22284669-22284782
Length
724 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTTTGTTTCTCTCCCTCAGATG
3' ss Score
12.19
Exon sequences
Seq C1 exon
GCCCTCTCCCACCACCTCCTCCAACGAACAGAAACGGCAGCACATCTCGGGCCCTGCCCGCCACCCCTCAGTTGCCGTCCAGGAGTGGAATAGATTCTAGTCCCAGAAGTGGGCCCCGGCCTCCCCTTCCTCCCGAAAGGCCTGGCACTGGGGCACCTCCCCCACCTCCACCATCAACATCAATTAGAAACGGCTTCCAAGATTCTTCATGTGAAG
Seq A exon
GTAAGCTGTGGTCCCAGCTCCTGGGAAGCTATAATGGGGCAGCAGCTGAGTGGGAGGTGTGTTTGTGTGTTTGCATGAACGTTTCTTGTTTGTGTGACCTCCACTGTTCACATTGCACGGCACTAATCTAAGCATTCTAGGGCCACTATGATTTCAAATGAAAAACAGTAATCGCCTTTTCCTTGCAAAAGGCAGATCATTATTCTCTGTTCCTTGTTTGAGTTTCATTTTGGTTAACTTTCCAAAGATTCTAGAATTCTGAAAAGAACCATTTTTGTAGCTTGCTTTCTTATCACCTACCTTTCTGGACAGTTTGCTATGGGTTTGAGGCCTAATGGCCTGCAGGTATTAAGCAGCTTATCCCTGTCATTATTATCAGTTACTCTTTCCACTGGGGAGGAATAATTAAGAAAAGTATCCCAAACCCCAGCCCCCATCTCCTGAGAGGAACTGGCTGGGTCCTAGTCACTCTAGCGAAAGTCACTTGGATCTGTCTTTGGTTTGATTCGCAGACCAGTACATTTTATCACTGACAGTGATAAATGACACTGTAATTTAATTTGCAGTAGTCAGTGACATTGGTAGCATTTGGGGCTTTTCTCTAAACTTCTAGATGTAAAACCAGATGTGATCTCTGCTGTTCTATTTCATTGTGTCTTTCATTATATTAGTCTTTAGAGCAGATTGTCTGTTACTGAAGATACTGTTTGTTTCTCTCCCTCAG
Seq C2 exon
ATGAGTGGGAAAGCAGATTTTACTTCCATCCGATTTCTGATTTGCCACCTCCAGAGCCATATGTACCAACAACCAAAAGTTATCCCAGTAAACTGGCGAGAAATGAAAGCCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001585:ENSBTAT00000002076:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCACCACCTCCTCCAA
R:
TTCGGCTTTCATTTCTCGCCA
Band lengths:
327-1051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]