HsaINT0182992 @ hg19
Intron Retention
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:12736]
Coordinates
chr2:175431798-175432801:-
Coord C1 exon
chr2:175432589-175432801
Coord A exon
chr2:175431912-175432588
Coord C2 exon
chr2:175431798-175431911
Length
677 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTGCTTGTTTCTCTTCCCAGATG
3' ss Score
11.07
Exon sequences
Seq C1 exon
GCCCCCTCCCACCACCTCCTCCAGTAAGCAGAAACGGCAGCACATCTCGGGCCCTGCCTGCTACCCCTCAGTTGCCATCCAGGAGTGGAGTAGACAGTCCCAGGAGTGGACCCAGGCCTCCCCTTCCTCCTGATAGGCCCAGTGCTGGGGCACCTCCCCCACCTCCACCATCAACATCTATTAGAAATGGCTTCCAAGACTCTCCATGTGAAG
Seq A exon
GTGAGGTGTGGTCCCAGCTCCCTGGGCTATAGGGCAGCAACTAAATGGTAAATCTGTTTGTATATGTGGTTTGCTTGTTTGCGTTTAATTTCTTGTTCCATCATTATCACACTCCATTGCACTGATCTAACTATCTAACCATTCTAAGGCCCACCATGATTTCAAATTAAAAATAGTAATCCCCCTTCCCCACTTCCCAAAAAGGCGGATCATTTTTCCCTGATCTGTTCTTTGTTTGGGTCTCATTTTAGTTAACTTTCCAGAGATTCCAGGATTCTGAAAAGAATCTTTTTATAGCTTCTTATTATGTACATTTCTAAACAGTTCACTGTAGGTAAGAGGCCTGACGGCCTGCAGATACTAAGTTGCCTATCTCTGCCATTGTTATCAATGGGGAAAAAGGTGTCCCATACCTTAGCCCCCAGCTCCTAAGAGGGACTGGCTGGATCCTAATCACTCTCACTAAAACCACTTTGCTTTGATTTGCAGGCCTGTATATATGTCAGTGTACTAATTCGTGACCTTTGTAGCACTTCCAGCTTTTCTGTAAACTTCTAGGCATAAAAACTAGCACTGATGTCTGTGGTTCTCTCTCTCTTTCATTCTGTGCCTTTCGTTACGTAAGTCTTCATAGCACATTGTCTGTCACTGAAGATACTGCTTGTTTCTCTTCCCAG
Seq C2 exon
ATGAGTGGGAAAGCAGATTCTACTTCCATCCGATTTCCGATTTGCCACCTCCAGAGCCATATGTACAAACGACCAAAAGTTATCCCAGCAAACTGGCAAGAAACGAAAGCCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935-WIPF1:NM_003387:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.968
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCACCTCCTCCAGTAAG
R:
CGGCTTTCGTTTCTTGCCAGT
Band lengths:
318-995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)