GgaINT0047295 @ galGal3
Intron Retention
Gene
ENSGALG00000009321 | Q5F3Q7_CHICK
Description
NA
Coordinates
chr7:18043390-18044623:+
Coord C1 exon
chr7:18043390-18043602
Coord A exon
chr7:18043603-18044509
Coord C2 exon
chr7:18044510-18044623
Length
907 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TGTTTTTGTTGTTCTTTCAGATG
3' ss Score
11.5
Exon sequences
Seq C1 exon
GCCCCCTGCCACCACCACCTCCCATCAGCAGGAACGGTAGCACCTCGAGGGCTTTACCTGCCGCTCCCCAGCTGCCTTCCCGGGCTGGGCTGGAGAACCAGAGGGGTGGGCCCCGGCCACCACTTCCCCCAGACCGGCCGGGAACGGGTGCACCACCACCACCACCACCACCTTCAGCAGCGCTCCGGAACGGCTTCCAGGAGTCGGGCGATG
Seq A exon
GTAAGCCGTGCTCCCAGCTACTTGCCCTCATAGAGATTGTGTAGCCGCTTTTGGCCTTAACGTGGCAAAAAAGTGTGGGGTAGAGGATAGAACAGGACTGCAAAGCTGTCAATATAGGCTTAAAAATAACCCATTGAAGTATAGCCTGAAAAGGAAGAAAACAGAAAAAGAAGACAGAAGCACTTCTCCATTCTTAGCTTTGCTACAGCGCATGAAGAAGTCTTAATGGGCTTGTTCTGGCTGCAATGTGAATTCAAGCCATAGCTACACTAAGGCTCCTTTTAGGTCAGAACAAGTTAGATGATGACTCAAAAACTGAAAGCTGAAAGACAGAGGAGGGAAGAGATTGTCAGAATGCTGCTGAAGATGTCAAGTTTCTCTCTTCTTGCTGGTGTTATTGAAAAGGTGAGATTCAAGATAGCTAAGATTCATTATGTTTTTCTTTTGAGTTGTTATCTATTTGCAAAAAGATAAATCTTTTGACTAATTATGGACGGCTGAAGTTGGTATTTCTGACATTTATGAAGTTAGGAAAAGCAAGCAGAAAGTTAAACTGTAACTCGCACTTTTGAATCATCTTTGCACTTCAGATAAGGCAGATGGGTTTCAAACGTATCTTTTTTCCCTAAGTGGTTTGCACAGTTCAGACCCTGCAGCACCTTTACATGCTGGTTTCTCGTTGTAACCATTGGGAATAAACATATTAAAACTGGATCCCAACAAATAACCTAATAGGATGCTGGTTCAGTATTCAGCTATCAGAGCATTTTGCAATAGAAAACATGGAAGAAATTCGATATTAGTATCAGTTGATTTTTCTGAAGCTGTATCACACAACTAACCAGTAAAACACATCTTTTTGTGTCTTTTGTTTTGTTGGTTTTGTGTGTTTTTGTTGTTCTTTCAG
Seq C2 exon
ATGAGTGGGAAAGCAGATTTTCTTTCCATCCTATATCTGATTTGCCACCTCCAGAGCCATATGTACCTGTGAATAGAAGTTACCCCAGTAAACTAGCAAGAAATGAAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321:ENSGALT00000038663:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACCACCTCCCATCAG
R:
CTCGGTTTTCATTTCTTGCTAGT
Band lengths:
319-1226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]