BtaINT0163484 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36367838-36368615:-
Coord C1 exon
chr25:36368477-36368615
Coord A exon
chr25:36367979-36368476
Coord C2 exon
chr25:36367838-36367978
Length
498 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACTTGCTTCCATCCTTGCAGACA
3' ss Score
10.57
Exon sequences
Seq C1 exon
CAGGGGGACAGCTTTGTGAATGACGACTGCTCCCAGCGCTGCACCTGCGCGCGCACGGGGTTCCTGCTATGTGAGCCCCTCGGCTGCAGCCCTGGGGAGGTCTGCACGCTGGGGAACCTCACTCGTGGCTGCTTCCGAG
Seq A exon
GTGAGCCGGGATGGGCCCTCAGCTTCCAGCTGCCCTCATCCCCTGTAGGGGCAGGGGAAGGGGGAAGTCCCTGGACTTGGAACAAACCAGCCCTTTCAGTCCTGGGAAGAGCCCATCTCATCAAGATCAGGACGCTGCTGCCATTTCATTTCTCTCTCTCTCTCTCTCTCTCGGGAGGGACAAGGCAGAGGCCCTGTCTTCTGAGCCTCTGCTCTCTGCTCTGCATTCGTGTCTCAAGATCTCCTTTAGTCCTTAATCAGCACTTGGGGTGGTGAGCATAGCATTCCCACATTATAGGGTAAAGAAAATGGAGTTCAGAAGAGGGTAAGCAGTTTCCCCAGATCTCGGGGGTATAGAACCAGGACTGGAAGCCTGGTCAGCGGACCCCAGCAAATGTCTCTGGGAGAAATTCTTCCCTGGTGTCCCAGCCCCCAGGCCCCTCTTCCTGGCTCTGAGTGTCCTCCCAGAACCCCCTCCCACTTGCTTCCATCCTTGCAG
Seq C2 exon
ACAGCCCGTGCCTACAGAACCCCTGTCAGAATGATGGGCGGTGCTGGGAGCAGGGAACGCACTTCACCTGTGAGTGTGAACCTGGTTACGGGGGAGACCGTTGCATGGAGCTGCAGGATGTACCTCCCCCTGAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(80.0=93.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGGACAGCTTTGTGAATG
R:
CTGGCTTTTCAGGGGGAGGTA
Band lengths:
279-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]