MmuINT0177561 @ mm10
Intron Retention
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137380786-137382211:-
Coord C1 exon
chr5:137382073-137382211
Coord A exon
chr5:137380927-137382072
Coord C2 exon
chr5:137380786-137380926
Length
1146 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
ACACCTTTCTGCCCTTGCAGACA
3' ss Score
11.25
Exon sequences
Seq C1 exon
CTGGGTGACAGCTTTGTAACTAACGACTGCTCCCAGCACTGTACCTGTGCAAGCCAGGGGATCCTGCTGTGTGAGCCCTATGGCTGCAGAGCTGGGGAGTCCTGCATGGTGGCCAACTTTACTCGAGGCTGCTTCCAGG
Seq A exon
GTAAGCCTGGGTCCTTCTGCTCTCTAAACCAGGGATACCCTCCCTCTCTCCCTCTCCTCTGCTGGGTGGGATTCTCGCTTCGTCTTGGCAAGTTTGCACCTTCACCCTCTCTTATCAAGTATTTACTACCTGCCATGCAGCACCTGTCCCAGAATCCACTTTAATCCTCACCTAGTGGAAAGTATGACATCCTACTTTATGAGCAATGAAAATAGGGCTCTGTCCAAGAATGGCAGTGGGCATATCTTTAATCCTAACACTAAGGAGACAGAGGTAGGTGGGTCTCTGTGGGTGTGGTCTGGTCTGCATAGAAGGTTCCAGGCCAGACAGGAGTACATAGTAAGACCCTATTTGTCTCTCTCAAAAGGGGGAGGACTCCAAGGCTAGAAAGATAGCTTGTAAAGTGCTTCCTGCACAAATGTAGGGGACCTGAGTTGGGTTTCTTAAACCACGTTTAAAAAGCTAAGTGTGTGCTAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGCCACCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACACAAACAAACAAACAACTGAGCGTAGCTGAGGGAGGTCTCTGTCTCTGTGCTTACTTGCTCTTGCAGAAGACCCAGGTTCAATTCCCACTACCCACATGGTAGTTGCCAACTGCCTGTAACTCCAGTTCTGGCCTCTGGGGGCAGCAGATACACACGTGGTACACATAAGTACAGCAGGCACTAACATTTACACATAAAATGGATCTCTGGGGCTTGCCAGGAGGACAAAGCAGATGGCAACTGAGGAATGGCCTTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATACCAATACACACGCACACGCGCACATGCGCGCGCGCACACACACACAAGGAAACTGGGGATTCCAGGACATTAAGCAAATTCTCTAGACCCAGGATAGCAGGGTTAAAGTGTAGATTGCCAAGTGAACCCTAGGTCAGGCTCCAGTGACTGCTGCCTTCTCCCCTGGGGCCTGTCCCACAGCCAGGCGTCTGCACTGTGAGTATCCTCTTGGGACCCACTAACACCTTTCTGCCCTTGCAG
Seq C2 exon
ACAGCCCTTGTCTGCAGAACCCCTGTCACAATGATGGCCGGTGTGAGGAGCAGGGGGCCACCTTCATCTGCCACTGTGACTTCGGTTATGGAGGAGAATTCTGCACAGAGCCTCAGGATATCACAACCAGAAAAAAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173:ENSMUST00000117564:84
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(80.0=93.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTGACAGCTTTGTAACT
R:
TCTGGTTGTGATATCCTGAGGCT
Band lengths:
270-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types