HsaINT1047032 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100794120-100795336:+
Coord C1 exon
chr7:100794120-100794258
Coord A exon
chr7:100794259-100795195
Coord C2 exon
chr7:100795196-100795336
Length
937 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
AACCCTCTCTGTCCTTGCAGAAA
3' ss Score
12.11
Exon sequences
Seq C1 exon
CTGGGCAGCAGCTTTCTGACTGAGGACTGCTCTCAGCGGTGCACCTGTGCCAGCTCACGGATCCTGCTGTGTGAGCCCTTCAGCTGCAGAGCGGGGGAGGTCTGCACCCTGGGGAACCACACCCAAGGCTGCTTTCCAG
Seq A exon
GTGAACCTGCACTCCTGCCCGGTTCCAAGCTGCCCCATGCCCTGGGGCGTCCATGGACCAAGGATCGTCCCCTCCTTGTCCTCAGGACTCTTCCACATTGATTTCAGGATGTCTGTCCCTGCCTTTGTAGGGAGGGACAAAGGACAAAGATCTCCCGATCCCTAAGCATCCATGACCTACCGAATCCTTCCCTAGCGTTCCTTCCCATGATCTCCTTCAGCCCTGATGGTTAGCACAGCACTCCTAATTTATACATAACAAACATGGAGTTCAGAGAGGTTAAGCAGTTTCCTGCTGGGCGTGGGTGACTCATGCCTGTAATCCCAGCATTTTTGGAGGTGAGGTGGGCGAATTGCTTTGAGCTCAGGAGTTCAAGATCAGCCTGGGCAATATAGGGAGACATCGTCTCTACTAAAAATTAAAGAAAAAAAGAGCTGAGTGTGGTGGTGCACTCCTGTAGTCTCAGCTACTTGGAAGCTGAGGTGGGAAGATCACTTAAGCCCAAGAAATTGAGGCTACAGTGAGCTATAATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGATCTTGTCTCAAAAAAGAAGAGAAGAGAAGGGAGGAGGGGAGGGCAGGGGAGGGGAGGAAAGGAAGGGAGGGAGGAGAGGGGAGAGGAGAGGAAGGGAGAGGAGGGGAGAAGGAGGGAAGGAGAGAAGGAGGGAGGAAAGGAGGAAGAAAGGAAGAGAGGAAGGAAGAGATGAAAGAGTTTCAAAGGAAGGAAGTTTCCCCAAAGCCCAGGGCTAGTGAGGCAGGGTTGGGAGCCAGGCTGGCTGACCCCTGGCCAGTCTCTGGCAGCCGCTGCTTTCTCCCCGGGCGTCCCAGCCCCCAGCCAGGCCTTCCCTCAGCTGGGAGTGTCCTCCCAGGGCCCCCCTCCCACAACCCTCTCTGTCCTTGCAG
Seq C2 exon
AAAGCCCGTGTCTGCAGAACCCCTGTCAGAATGACGGGCAGTGTCGGGAGCAGGGAGCCACCTTCACCTGCGAGTGTGAAGTTGGTTACGGGGGAGGCCTGTGTATGGAGCCTCGAGATGCGCCACCTCCCAGAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(80.0=93.6)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0000822=EGF=WD(100=64.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCAGCTTTCTGACTG
R:
CTGGCTTTCTGGGAGGTGG
Band lengths:
278-1215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains