HsaINT0184467 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100391742-100392958:+
Coord C1 exon
chr7:100391742-100391880
Coord A exon
chr7:100391881-100392817
Coord C2 exon
chr7:100392818-100392958
Length
937 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
AACCCTCTCTGTCCTTGCAGAAA
3' ss Score
12.11
Exon sequences
Seq C1 exon
CTGGGCAGCAGCTTTCTGACTGAGGACTGCTCTCAGCGGTGCACCTGTGCCAGCTCACGGATCCTGCTGTGTGAGCCCTTCAGCTGCAGAGCGGGGGAGGTCTGCACCCTGGGGAACCACACCCAAGGCTGCTTTCCAG
Seq A exon
GTGAACCTGCACTCCTGCCCGGTTCCAAGCTGCCCCATGCCCTGGGGCGTCCATGGACCAAGGATCGTCCCCTCCTTGTCCTCAGGACTCTTCCACATTGATTTCAGGATGTCTGTCCCTGCCTTTGTAGGGAGGGACAAAGGACAAAGATCTCCCGATCCCTAAGCATCCATGACCTACCGAATCCTTCCCTAGCGTTCCTTCCCATGATCTCCTTCAGCCCTGATGGTTAGCACAGCACTCCTAATTTATACATAACAAACATGGAGTTCAGAGAGGTTAAGCAGTTTCCTGCTGGGCGTGGGTGACTCATGCCTGTAATCCCAGCATTTTTGGAGGTGAGGTGGGCGAATTGCTTTGAGCTCAGGAGTTCAAGATCAGCCTGGGCAATATAGGGAGACATCGTCTCTACTAAAAATTAAAGAAAAAAAGAGCTGAGTGTGGTGGTGCACTCCTGTAGTCTCAGCTACTTGGAAGCTGAGGTGGGAAGATCACTTAAGCCCAAGAAATTGAGGCTACAGTGAGCTATAATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGATCTTGTCTCAAAAAAGAAGAGAAGAGAAGGGAGGAGGGGAGGGCAGGGGAGGGGAGGAAAGGAAGGGAGGGAGGAGAGGGGAGAGGAGAGGAAGGGAGAGGAGGGGAGAAGGAGGGAAGGAGAGAAGGAGGGAGGAAAGGAGGAAGAAAGGAAGAGAGGAAGGAAGAGATGAAAGAGTTTCAAAGGAAGGAAGTTTCCCCAAAGCCCAGGGCTAGTGAGGCAGGGTTGGGAGCCAGGCTGGCTGACCCCTGGCCAGTCTCTGGCAGCCGCTGCTTTCTCCCCGGGCGTCCCAGCCCCCAGCCAGGCCTTCCCTCAGCTGGGAGTGTCCTCCCAGGGCCCCCCTCCCACAACCCTCTCTGTCCTTGCAG
Seq C2 exon
AAAGCCCGTGTCTGCAGAACCCCTGTCAGAATGACGGGCAGTGTCGGGAGCAGGGAGCCACCTTCACCTGCGAGTGTGAAGTTGGTTACGGGGGAGGCCTGTGTATGGAGCCTCGAGATGCGCCACCTCCCAGAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:44
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.291 A=NA C2=0.202
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(88.0=93.6)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0000822=EGF=WD(100=64.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCAGCTTTCTGACTG
R:
CTGGCTTTCTGGGAGGTGG
Band lengths:
278-1215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)