BtaINT0164166 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004974 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr1:59064067-59064980:+
Coord C1 exon
chr1:59064067-59064201
Coord A exon
chr1:59064202-59064785
Coord C2 exon
chr1:59064786-59064980
Length
584 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GTTCCACTTTTCTTTCTGAGGGC
3' ss Score
-3.55
Exon sequences
Seq C1 exon
AGACTCCAGTCATCGCGCCCGTAACCCAGCGGAGCAGAGATCCCGGAGCCGCGTCCGCGCCCCGGGAGAAGCCAACCCTGCTCTTCTCCGCCTCGGCCTCTTTGGCTGTGGCCGCACCTCGGCTCCGGAGCGCAG
Seq A exon
GTAACTTCCCTCCCAAGGTCATTCTTCGGGCTGGGCGGCGTGGCGTTCTCGGTCCGCCCACGTTCTTGCGATTGACGGGGGCGGTAGAGGCGCGCCCAGCCTGCTGAGGAGAAGCGGGGCTGGACGGCGACCCCGAGCGTTGACCGAGCTCCTCTCCCGAGCCGGGTCGTCGGCCCCAGCGGGTAGACGCTTTGTTTCCGCCCGCAGCCCCGAGGGTGTTTCCATCCGCACCCAAGCTTCGGGCGGGGACAGCTCGGTTCTCCCCAGCCCGCACCCGCAGGTGAGCGCAGCCACCCGCGCCCGGGCTGTCCCGGGCCGCGTAGTCGGCTGTCGTCATGGGAACCGCTGGTGCCCAGACGGCGCTGGTCCTGGATCGGGGGTACCTGGCATTGAAGGCAGCTCGGAAGCGGCTGGAGCCCTAGAGCTCTGCGTCTGGCCAAGGACAGCCAGAAAATCCTGATGAAAAGGGGACCACCTCCCCCTCGTTCTCATTTTTTAATTCTCAGGCGTTGGTGGTTAATCAGAGATGGAAGTGGATGTGTTTACGAGATGTGAGTTGTATTCGTTCCACTTTTCTTTCTGAG
Seq C2 exon
GGCTTCGTGTGCCTCGTAGTGACAGGTGGAAATCACGACCCAGAAGGGCACTATGAAGCCAGTGAAGAAAACCAAAGCGGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCTTGTTTGTGTGATTGCCAAGATCTGGACGAAGGGTGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004974:ENSBTAT00000006547:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCAGTCATCGCGCC
R:
TCACACCCTTCGTCCAGATCT
Band lengths:
326-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development