HsaINT0185238 @ hg38
Intron Retention
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr3:113947901-113948963:+
Coord C1 exon
chr3:113947901-113948190
Coord A exon
chr3:113948191-113948793
Coord C2 exon
chr3:113948794-113948963
Length
603 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTTACGCCTCATGGTGACAGGTG
3' ss Score
5.59
Exon sequences
Seq C1 exon
GGGGCACCCGGAAGCGCGCGTGGACCTGGCGCACCGAGCCGGGCGGGCGGAGGGGCGGTTGGGACGGCGCGGGGAGGCGGGCGCGCCGCCCGGGCCGCGGCGGGCTGTGGTCACAGGTGGGCGGCTGCGGCGAGGGAGCGGCCGAGCGGAGCCCGGGTCCCGGAGACTCCTGCCGTCACGCCCGGGGCTCCGCGTAGCAGAGATCGGGAGACGCGTCTGTGCCTCCGGGGAAGCCGACCCATCTCCCCTCCGCCTCTTTGGCTGCAGTTGCACCTCCGGCCAGAGGGCAG
Seq A exon
GTAACTTCCCTTCCAAGGTCATTCTCCTGGCGGGGTGGTGCGCGAGGCCCGCCCACGTCCTCCGGATTGGCGGGGGCGGGAGAGGCGCACCCTGCAAGGGGCCCGACCAGTTGGGCTGGACCGCGACCCCTGAGCACTGCCAGGGAGCCTGGTGTGTCAGCCGCTGCTAGCGGGCATATGCTTCGCCTTTCCCTATAGCCCCGAGGCTGAGTTCCCACCAGCGCCCAGGCTTGGAGCGGAGACCGCTCGGCCCTCCCAGCCTGCACCCGCAGGTGAGCGCAACCGCCCGCGCCCCGGCTGTCCCGGACGCGTGGTCGGCTGTCGCCATAGGAACGGCTGGTGCCCAGACGGCGCCTGCCCAGGCTGGGAAGGGGCGGTGAAGGCAGCTCAGACCTCCAAGAACCCTGGAGCCCCCTGTGTGGCCAGGCGGAGCCACAGAAGCCTGATGAAAACGGGACCCCCTCCCCCTCTCTCTTCTCATTTTTGATTGCTCAGGCGTTGGAGGTTAAGCAGAGAGAGAGAGGCGTGGACCTATTTACGAGATGTAAGTTGTGTTCTTTCCACCTTTACCTTCTGAGGGCTTCTTACGCCTCATGGTGACAG
Seq C2 exon
GTGCAAATCATGACACAGAAGGGCAGTATGAAGCCTGTGAAGAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTGATTGTCAAGATCTGGATGAAGGGTGTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307:ENST00000330212:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.216
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTCACAGGTGGGCG
R:
CGATCACACCCTTCATCCAGA
Band lengths:
355-958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains