HsaINT0185238 @ hg19
Intron Retention
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:28654]
Coordinates
chr3:113666748-113667810:+
Coord C1 exon
chr3:113666748-113667037
Coord A exon
chr3:113667038-113667640
Coord C2 exon
chr3:113667641-113667810
Length
603 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTTACGCCTCATGGTGACAGGTG
3' ss Score
5.59
Exon sequences
Seq C1 exon
GGGGCACCCGGAAGCGCGCGTGGACCTGGCGCACCGAGCCGGGCGGGCGGAGGGGCGGTTGGGACGGCGCGGGGAGGCGGGCGCGCCGCCCGGGCCGCGGCGGGCTGTGGTCACAGGTGGGCGGCTGCGGCGAGGGAGCGGCCGAGCGGAGCCCGGGTCCCGGAGACTCCTGCCGTCACGCCCGGGGCTCCGCGTAGCAGAGATCGGGAGACGCGTCTGTGCCTCCGGGGAAGCCGACCCATCTCCCCTCCGCCTCTTTGGCTGCAGTTGCACCTCCGGCCAGAGGGCAG
Seq A exon
GTAACTTCCCTTCCAAGGTCATTCTCCTGGCGGGGTGGTGCGCGAGGCCCGCCCACGTCCTCCGGATTGGCGGGGGCGGGAGAGGCGCACCCTGCAAGGGGCCCGACCAGTTGGGCTGGACCGCGACCCCTGAGCACTGCCAGGGAGCCTGGTGTGTCAGCCGCTGCTAGCGGGCATATGCTTCGCCTTTCCCTATAGCCCCGAGGCTGAGTTCCCACCAGCGCCCAGGCTTGGAGCGGAGACCGCTCGGCCCTCCCAGCCTGCACCCGCAGGTGAGCGCAACCGCCCGCGCCCCGGCTGTCCCGGACGCGTGGTCGGCTGTCGCCATAGGAACGGCTGGTGCCCAGACGGCGCCTGCCCAGGCTGGGAAGGGGCGGTGAAGGCAGCTCAGACCTCCAAGAACCCTGGAGCCCCCTGTGTGGCCAGGCGGAGCCACAGAAGCCTGATGAAAACGGGACCCCCTCCCCCTCTCTCTTCTCATTTTTGATTGCTCAGGCGTTGGAGGTTAAGCAGAGAGAGAGAGGCGTGGACCTATTTACGAGATGTAAGTTGTGTTCTTTCCACCTTTACCTTCTGAGGGCTTCTTACGCCTCATGGTGACAG
Seq C2 exon
GTGCAAATCATGACACAGAAGGGCAGTATGAAGCCTGTGAAGAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTGATTGTCAAGATCTGGATGAAGGGTGTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-ZDHHC23:NM_173570:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.235
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTCACAGGTGGGCG
R:
CGATCACACCCTTCATCCAGA
Band lengths:
355-958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)