HsaEX0072523 @ hg19
Exon Skipping
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:28654]
Coordinates
chr3:113666748-113673257:+
Coord C1 exon
chr3:113666748-113667033
Coord A exon
chr3:113667533-113667581
Coord C2 exon
chr3:113672547-113673257
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTCATTTTTGATTGCTCAGGCG
3' ss Score
6.06
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGGGCACCCGGAAGCGCGCGTGGACCTGGCGCACCGAGCCGGGCGGGCGGAGGGGCGGTTGGGACGGCGCGGGGAGGCGGGCGCGCCGCCCGGGCCGCGGCGGGCTGTGGTCACAGGTGGGCGGCTGCGGCGAGGGAGCGGCCGAGCGGAGCCCGGGTCCCGGAGACTCCTGCCGTCACGCCCGGGGCTCCGCGTAGCAGAGATCGGGAGACGCGTCTGTGCCTCCGGGGAAGCCGACCCATCTCCCCTCCGCCTCTTTGGCTGCAGTTGCACCTCCGGCCAGAGG
Seq A exon
GCGTTGGAGGTTAAGCAGAGAGAGAGAGGCGTGGACCTATTTACGAGAT
Seq C2 exon
ATGGATTACATGTAAATCTTTACAGCCAGAGACTTGTGAAAGAATCATGGATACAATTTCTGATCGCCTCCGAATTCCTTGGCTTAGGGGAGCCAAAAAAGTGAACATCAGCATCATCCCTCCGCTTGTCCTGCTGCCTGTCTTCCTTCATGTGGCTTCCTGGCATTTCCTCCTGGGGGTGGTGGTTTTGACCTCCCTTCCTGTGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACCCTGTTTTTCCTGAGCCTTGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAAGGGCGTGTGGGTCCCGTTCAGCTGGCGGTTCTTACCTGCGGGTTATTTCTGATACTCTTAGCCTTGCACAGAGCCAAGAAGAATCCAGGCTACCTCAGCAATCCAGCAAGCGGTGACAGATCTCTAAGCAGCAGCCAGCTGGAGTGCCTGAGCAGAAAAGGGCAGGAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.241 C2=0.107
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0152915=zf-DHHC=PU(52.1=46.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCCTCCGCCTCTTTG
R:
CCCCTAAGCCAAGGAATTCGG
Band lengths:
136-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)