HsaEX0072524 @ hg19
Exon Skipping
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:28654]
Coordinates
chr3:113666748-113673257:+
Coord C1 exon
chr3:113666748-113667033
Coord A exon
chr3:113667641-113667810
Coord C2 exon
chr3:113672547-113673257
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTTACGCCTCATGGTGACAGGTG
3' ss Score
5.59
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GGGGCACCCGGAAGCGCGCGTGGACCTGGCGCACCGAGCCGGGCGGGCGGAGGGGCGGTTGGGACGGCGCGGGGAGGCGGGCGCGCCGCCCGGGCCGCGGCGGGCTGTGGTCACAGGTGGGCGGCTGCGGCGAGGGAGCGGCCGAGCGGAGCCCGGGTCCCGGAGACTCCTGCCGTCACGCCCGGGGCTCCGCGTAGCAGAGATCGGGAGACGCGTCTGTGCCTCCGGGGAAGCCGACCCATCTCCCCTCCGCCTCTTTGGCTGCAGTTGCACCTCCGGCCAGAGG
Seq A exon
GTGCAAATCATGACACAGAAGGGCAGTATGAAGCCTGTGAAGAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTGATTGTCAAGATCTGGATGAAGGGTGTGATCG
Seq C2 exon
ATGGATTACATGTAAATCTTTACAGCCAGAGACTTGTGAAAGAATCATGGATACAATTTCTGATCGCCTCCGAATTCCTTGGCTTAGGGGAGCCAAAAAAGTGAACATCAGCATCATCCCTCCGCTTGTCCTGCTGCCTGTCTTCCTTCATGTGGCTTCCTGGCATTTCCTCCTGGGGGTGGTGGTTTTGACCTCCCTTCCTGTGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACCCTGTTTTTCCTGAGCCTTGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAAGGGCGTGTGGGTCCCGTTCAGCTGGCGGTTCTTACCTGCGGGTTATTTCTGATACTCTTAGCCTTGCACAGAGCCAAGAAGAATCCAGGCTACCTCAGCAATCCAGCAAGCGGTGACAGATCTCTAAGCAGCAGCCAGCTGGAGTGCCTGAGCAGAAAAGGGCAGGAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.235 C2=0.107
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0152915=zf-DHHC=PU(52.1=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCAGAGATCGGGAGACGC
R:
ATGCCAGGAAGCCACATGAAG
Band lengths:
258-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)