BtaEX6001041 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004974 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr1:59064067-59070323:+
Coord C1 exon
chr1:59064067-59064201
Coord A exon
chr1:59064786-59064980
Coord C2 exon
chr1:59069613-59070323
Length
195 bp
Sequences
Splice sites
3' ss Seq
GTTCCACTTTTCTTTCTGAGGGC
3' ss Score
-3.55
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
AGACTCCAGTCATCGCGCCCGTAACCCAGCGGAGCAGAGATCCCGGAGCCGCGTCCGCGCCCCGGGAGAAGCCAACCCTGCTCTTCTCCGCCTCGGCCTCTTTGGCTGTGGCCGCACCTCGGCTCCGGAGCGCAG
Seq A exon
GGCTTCGTGTGCCTCGTAGTGACAGGTGGAAATCACGACCCAGAAGGGCACTATGAAGCCAGTGAAGAAAACCAAAGCGGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCTTGTTTGTGTGATTGCCAAGATCTGGACGAAGGGTGTGATAG
Seq C2 exon
ATGGATCACGTGTAAGTCCGTGCAGCCTGAGACCTGTGAAAAGATCATGGACACGATCTCAGACCGCCTCCGGATTCCTTGGCTTAGGGGAGCCAAGAAAGTTAACATTAGCATCCTTCCCCCACTGTTCCTGCTGCCTGTCTTCCTCCGAGTGGCTTCCTGGCATTTTCTCCTTGGGGTGGTGGTTTTGACCTCCCTCCCCGTGCTGGCTCTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACTCTGTTTTTCCTGAGCCTCGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAGGGGCGTGTGGGGCCCACTCGGCTGGCTCTTCTTACCTGCGGGTTATTGCTCATCCTCTTCGCCTTGTACAGAGCCAAGAAGAATCCAGGCTACCTCAGAAACCCAGCACACAATGACAGGGCTCTAAGTGGCAGCCAGGTCGAATGCCTGAACAGAAAAGGGCCTGAGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004974-'1-7,'1-1,3-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.080
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0152915=zf-DHHC=PU(52.1=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCCAACCCTGCTCTTC
R:
GGAGAAAATGCCAGGAAGCCA
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]