RnoEX0100874 @ rn6
Exon Skipping
Gene
ENSRNOG00000060348 | Zdhhc23
Description
zinc finger, DHHC-type containing 23 [Source:RGD Symbol;Acc:1303254]
Coordinates
chr11:61661310-61667878:+
Coord C1 exon
chr11:61661310-61661333
Coord A exon
chr11:61662256-61662527
Coord C2 exon
chr11:61667168-61667878
Length
272 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTATTGCTCAGGCG
3' ss Score
8.37
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGCTACAGCGGGCCTCTGGGGAAG
Seq A exon
GCGTTGGCGTTAATGAGAAGTGAAGATGTGTTTACAGGATGTGAGTTGAGTTCTCTCCACCTTTACCTTCCGAGAGCTGCTTCTTATGCCTCATGGTGACAGGTACAAATCTTTACGCTAAAAGGCAATATGAAGCCAGTAAAAAAAAAGAAAACCGAAGAGCCTGAATTGGAGCCCCTGTGTTGCTGTGAGTACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCCTGTTTGTGTGATTGTCAGGACCTCGATGAAGGCTGTGACAG
Seq C2 exon
ATGGCTTACCTGTAAATCGCTTCGGCCGGAGACGTGTGAGAGAATCACGGATACGATTTCTGATCGCCTCCGAATTCCTTGGCTCCGAGGAGCCAAAAAAGTCAATATCAGCATCCTCCCCCCACTCGTGCTCTTGCCGGTTCTGCTCCGCGTGGCTTCCTGGCACTTCCTGCTGGGGGTGGTGGTTCTGACCTCCCTGCCCATGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAGCAGACGCTGTTTTTCTTGAGCCTCGGTCTGTTCTCCCTGGGCTACATGTACTATGTGTTCTTGCAGGAAGTGGTCCCCCAAGGGCACGTAGGGCCCGCTCAGCTGGCCCTTCTCACCTGCGGGTTATTTCTGATACTCGTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAACCCAGCATGCAATGACAAATCCCCCAGCAACAGCCAAATCGAATGCCCGATCAAAAAAGGGCAGGAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060348-'0-5,'0-1,7-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.146 C2=0.038
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0152915=zf-DHHC=PU(52.1=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCGGGCCTCTGGG
R:
AGAACAGACCGAGGCTCAAGA
Band lengths:
303-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]