DreEX6094809 @ danRer10
Exon Skipping
Gene
ENSDARG00000003899 | zdhhc23b
Description
zinc finger, DHHC-type containing 23b [Source:ZFIN;Acc:ZDB-GENE-040808-13]
Coordinates
chr24:20983936-20987188:-
Coord C1 exon
chr24:20986920-20987188
Coord A exon
chr24:20986087-20986260
Coord C2 exon
chr24:20983936-20984634
Length
174 bp
Sequences
Splice sites
3' ss Seq
TAAACTTGTTTCTCTTACAGGAA
3' ss Score
11.1
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACACACAGCGGCGTACTGCTGCTGCTGTGTTTATGTCACGCTACTTCCTGGTGCTTTTCGAAGTAAACTTCATACATTTGGACTAGTTTACTTGCTATAGTTTTTTTCAGCCACTCTTCGATTCTGTGAAATGAATGATTAAGTTCCTATGGGGAAGAAGGCTAAAAGACTAGAAGGTTCCGAAATCCAACCTGAGGCAGCTGGCGAGCATGTTTACAGTACTAGAAAGGAAGTTCATCTCCTGCAATATGAATGTGTTGTGAGTGCT
Seq A exon
GAATGCGGTCTCTTTGTTTTATGAGTTGATGTCCATCATGAAGAAGAGATCTAGTCGAGCAGCAGATCCGGATGAACTTCTGTGCTGTTGTGAGTACATTGACCGTCATGGCAGTCGCAGTCACATGGTGGCATGTTGCTGTGACTGTGAGGATTTGGATGAGGCTTGTGACAG
Seq C2 exon
ATGGATGAACAAGGAGCCTCAAAACCCAGACTCTGTGTCTCGGGCACTGGCCACCATCAATGACCGTCTGCGGGTGCCTTGGATATCCGGTGCCCGACAAATAGACGTATCACTCATCCCTCCTCTCATTCTACTGCCTGTTTTTTTGCACATTGCAGCTTTGCACTACCTGCTGGGAATTATAATGCTGACAGCCATGCCCATCACTGTCCTGTGGTATTATTTCTTCACTCACCGAAAGAAAGGACGCACTCTATTCTTCCTCGGCCTCGCTCTCTTCTCCCTCTTCTACATGTTCTACCTGTTCCTCACGCAGGTGGTTCCTCGAGGGGAAGTCACTGAGCTTCAGCTGGCTGTGGTGACGGCTGGTGTCGCTCTCACTGTTATTTTCCTTATGCTCACCAAAAGAGGGCCAGGTTTGGTCAGACCTCGTCCATCTGAGACTCACAGTACAGTGACGTATCACAGCACTCCGCCTGATGTAGATGGGGTATATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003899-'2-1,'2-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.020 C2=0.068
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0152915=zf-DHHC=PU(52.0=45.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTGGTGCTTTTCGAAGT
R:
AGTCTGGGTTTTGAGGCTCCT
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]