BtaINT0164394 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039287 | ZFP69
Description
Bos taurus zinc finger protein 642 (ZFP69), mRNA. [Source:RefSeq mRNA;Acc:NM_001102063]
Coordinates
chr3:106272878-106275253:-
Coord C1 exon
chr3:106274867-106275253
Coord A exon
chr3:106272964-106274866
Coord C2 exon
chr3:106272878-106272963
Length
1903 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGCCTCTTTTCCTTCCTCAGCTC
3' ss Score
9.7
Exon sequences
Seq C1 exon
GAAGAGGCGTATACTCAGACCTACTCAACCAGCCACCTGCAAGCAGGCAGGACTTAATTTTAGAGAGGAATCAGTTTTTCAGAGCTGTGAGAGCCACATCAGCCTCTAGGAGCCCCTAGGTTCTGGTGCCACAGGCACACGCAAGAATCCTGAGGGCAGGAGACAGATCACAGGAGGACCACGCAACTGTGAGGCATCTAAGCAGAGGCTCTGGCCATTTGCTCACCAGAAGTGGACAAGGTCAGTCAGGAGGCATCGTCATGCTGCAGCAGCTCCTGATCACCCTGCCCACCGAGGCCAGCACATGGGTGAAGTTGCACCATCCAGAGAACGCCAAGGAGGGGGCGCCCCTGTGGGAGGATGTGACCAAGATGTTTGAAGGAGGAG
Seq A exon
GTGAGAATAGGCTGATGGATGGGGGATGGAGGAGGAAGAAGGGTTCTCAATCTGCTTGGGGAAAATAGGTACAAACATCATTGAAGTGGTCTCTGGGGGGGGAGAAAATTGGGAGAGACTAGGTTCCTGGGGCTCGTGCTTGGGGCTTTGGGGAAGGAGATAGCTGTGTGAGAAAATGTTGGGCTCTTAAGCACTGGGTCCCTGCGACGTGTGCTCCATGCTGCTCCCATCTCCTGTCCTTGAATAAACACAGGACAGGAAGACAGAATTCAGGGTGTTCCCCACCAGCAGCTGTATAAGTGTGATTTACAGACATTAGAGTCAAAGGTTTCTACCCCCTTAAGCCCTCCAGTGGTTTTCCTTTATTAGTCTCAGTCTAGTCCCAAACCAATGCTTTTTCTTTCTTTTCTTCTCCCGCTAGGAGGAAGGAATGACATGCTTGGCTACTCTCACTTTACCTTGAACTGTTTTGAGTTCAGTGGGAAGCATGTCCAAGGTTACACAGTATTTGTTGGCCGGGTCAGGATAGATGGATGGACAGAGGAATTAGCATATCTCATGGGGTCTCTTTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATTCCATGGACGGAGGAGCCTGGTAGGCTCCAGTCCATGGGGTTGCTAAGAGTCGGGACACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAGCCCACTCCAGTATTCTTGCCTAGAGAATCCCAGGGATGGGGGAACCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACATGACTGAAGCAACTTAGCAACAGTAGCAGGAGCAGCATGGGGTCTCTTAGTTCATCTTTAATACTTCAAGAGTCAGACAGGGACTTTGTTAAGCATCTTGATGGATGGAAAAATGAATAATGATCTCTAATGCTAATTATTAATTGATAGAGATAGACACCGGAGAAGGCAATGGCACCCCACTCCAGTACTTTTGCCTAGAAAATCCCATAGATGGAGGAGCCTGGTAGGCTGCATTCCATGGGGTCGCTAGAGTTGGACACGACTAAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCTGTCTATGGGGTCGCACAGAGTTGGACATGACTGAAGTGACTTAGCAGCAGCAGCAGCAGAGATACACACATACCCGGATGGAAAGAAGAGAAAGTAGCCTAAATACATTTTATGGTAAAATTCTTACGGAAGACAAGAGACAGGAAAATTCTTCTGATTGTATTTATCAGAGAAATTTTCACAAAGCAGATAGCACTGAATTGAGCCTTAAAAGATGTCTATCGTTTTTATGGAAGAGTTGGGAAAAAAATACAAAAGTGGGGACCTTGAAGAGTGGTTCAGAGAATGGAGACTGTTCTAGTCTCACTGAGGGTTAAGAATGTGGCCAGTGCATGTGTCCCACAGATAAAGGGTGGTGGTTAGAGGAAACTAATGCTCGGAAGATACGCTTCAGGCAGATTGTAGAGTGCCATGAAGTCTGTGGGTAGTGTGTGGATTTTTCTTGCTTGTAAGTGGGGAACCTTTGAGGATTTCTGAACAGAGGAGTGGCCTGGTAGGTCAGTGTTTTTGGACCAGCATTGACCATTGGGAAACATTAATACCCCAGTCAGTGCACTGCAGGGCCTCCTCATTAAGGAGACTCCAGTCTGCTCTTGAGTCGCTCTGAATGTCTTTCTTTGTGAGTGTATTCAGAGAAGGGCTGTTTTCAGCAGAACTGCAGGCAGTTTTTCTGTTTAATGGGGTAAGGTAAGATGCAAACTTTCTGCCTCTTTTCCTTCCTCAG
Seq C2 exon
CTCTGCTATCTCAGGATGCTGATGAGACCCAGGGAGAAAGTTTAAAGGATGAATTGACCCCCGGGACCCCAACAACAGACTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039287:ENSBTAT00000052349:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(95.5=97.7)
A:
NA
C2:
PF0202312=SCAN=PD(2.3=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCCTCTAGGAGCCCCTA
R:
CCGGGGGTCAATTCATCCTTT
Band lengths:
354-2257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]