MmuINT0179718 @ mm9
Intron Retention
Gene
ENSMUSG00000064141 | Zfp69
Description
zinc finger protein 69 [Source:MGI Symbol;Acc:MGI:107794]
Coordinates
chr4:120619894-120622165:-
Coord C1 exon
chr4:120621937-120622165
Coord A exon
chr4:120620175-120621936
Coord C2 exon
chr4:120619894-120620174
Length
1762 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CAGCTCTTCTCCTTCTACAGCTC
3' ss Score
8.34
Exon sequences
Seq C1 exon
GGGCTCAACAACTCTTCCAGGGTAAAAGATTATGGCCTGAGGACGATACAACCAGGAAGCCTCTCATCGAAAGTTCCAGCAGTTTCCCCACCCGAAGCTGCCACCCCCAGTCAGGCCGGCGCCATCATGCCTCAGCAGCTCCTGATCACCCCGGCCACTGAGGCGACCTGGGTGAAGTTGAAGGAGGTGTCCCTGTGGGAGGATGTGACAAAAATGTTTGGAGGAGAAG
Seq A exon
GTGAGAACAGACAAAGTTGGAAGAAGGGGTGGTCCCTTGGGGATAACTTAGGGGAAAGAAGATCCATGCGGGTTCATGCTTGTGCCATGGGGGTCAGGGGATATTTGTGAAGGAAATGCTGGGCTCCTACCTCTGCTTCCTGGTGACTTTTGCTGTGTGTCCCTTCTTTTCCCTGTCCCCAGAAACAATATATAACAGGAAGGAAGGCCACAGGATGTGCCCCTCCCCCACTGCCAGTTCCTGCGTGTGAGAGCCTAACTCAGAATCAGGGAATCAAAGGTCTCTGGCCCGAGTCTCAGGTTTTCTGCAAAACTCCTGGTCATCTTTGCCCTAGTCAGTCTTTTTGGTAATCTTTTTTTCATCCTCTTTCTCTGAGAGGCAAGAACAAAATGCCTGACTGCTCTCATTTTACCTAAGTTGGTTAATTCCTTTAAGACATGCCCAAGTCTTAGTCTGCGCAGAGTAGTAGGGTAGGAAGAGGAGTCAGTGTTTTGTGTGGTCTCATCATTCATACCCATAATGCTTTGTGTTCAGCCCAGAGTTTTTATGTTCTAGCTGAGGGACTTTGGCTCAACATCTTTTTTTTTAATTAATTAACTAATTAATTAATTAATTAATTTATAGTATATGAGTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAACTGAACTCAGGGTCTCTGGAAGAGCAGTCATTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCTGGCTAAACATCTTAACAGTTGATAAAAATGAATATTGCCTCATTACCTCTCTTTGTTGGTGGCGGCAGTGTTTGGTATAGACCAGCCTAGCCTCCAGTTTGAATTGCTGTGTAGCAGAGGCTAGCCTCTAACTCTTTATCCTCCAACTTCTACCTTTTGAGTACAGGGATTAGAGGTGAGTGCCACCATGTCTGGCATGAATGAGTTATTATGTGTGATGATGCTTATTATTAATTGGTGGGGGAGACACAGATAAAAATAATAGCAGATAGCCTTTAAAACAGGTTCTTTGGTATGCAAAGGGCAAGAAGCCATCTTCCATTGCATGGACTAAGATTTTCTTAAGGCAGATACCATGGAATCAGGTCTAGATAGTGTCTTAGTTTTTATTGGAGAAGGGATAGAAAAATCCATACTTAAGGAGTGGGTTTCAAAGTGAACCACAGAGTGGGGACGTTCAGCCTAGTCAAAGCTTAAGAATATGGTGCTGAGAGCTGGGCATGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACATACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAAAAACCCTGTCTCTAAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGTGGTGCTGAGTGAATAAATGAATGAATTAGTTAATAATAAAGAATGTGGTGCCCATCTGAGTGTGCAGCCGAGGTCAGCCTGAACTACCGAGTGAGACCCTGTCTAAAAACAAGAGCAAGTCCGGTGTGGTGTGGAAAGCTTGAGTCTCCAGTGAGCAGGATGCAGATGCAGGCAGATCTCTGAGCTCCAGGCTGGCCAAGGCTACATGGTCTTTGTGAGTGTTGGGGAAGGAGCCCCTGCCAATGGGCCTGGGGAGCTGGGAAGGTATACACCTCACAGCTCTTCTCCTTCTACAG
Seq C2 exon
CTCTGCTATCCCATGATGCTAATGGGACACAACAAGAAAGCTTAGCTGATGGAACGACCCCTGGCACCCCTGCAGCAGGATCCCATGATGGAGCGACCCCTGGCACCACTGCAACAGGATCCCATGATGAAGCGACCCCTGGCACCCCTGCAGCAGGATCCCATGATGGAGAGACCCCTGGCATCCCTGCAGCAGGATCCCATGATGGAGAGACCCCTGGCACCCCTACAGCAGGATCCCATGATGGAGTGACCCCTGGCACCACTGCAGCAGGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064141-Zfp69:NM_001005788:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAAGCCTCTCATCGAA
R:
CATCATGGGATCCTGCTGCAG
Band lengths:
347-2109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: