HsaINT0187979 @ hg19
Intron Retention
Gene
ENSG00000187815 | ZNF642
Description
zinc finger protein 642 [Source:HGNC Symbol;Acc:24708]
Coordinates
chr1:40945005-40947526:+
Coord C1 exon
chr1:40945005-40945160
Coord A exon
chr1:40945161-40947434
Coord C2 exon
chr1:40947435-40947526
Length
2274 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGGCTCTTTTCCTTCCCCAGCTC
3' ss Score
9.12
Exon sequences
Seq C1 exon
AAGTGGACAAGTCCAGTAAGGCAGGCATCATGCCACAGCAGCTCCTGATCACCCTGCCTACCGAGGCCAGCACCTGGGTGAAGCTGCAACATCCAAAGAAGGCCGTGGAGGGGGCGCCCCTGTGGGAGGATGTGACTAAAATGTTTGAAGGAGAAG
Seq A exon
GTGAGAATGGACTGATGGAGGGGGAAGAAGGGGATCTCATTTGTGTGTGAAAAGATAGGTACACACTTCATTGAAGTGGAGAGAAGGAGGGAGAGAAGGTCTCTGGGGGTTCATTCTTGTGGTTTTTGGGAAGGGGACAGCTGTGAGGGAAAATCTTGGGGTCCAGCATGGACTCCTTGTGACACGTGCTTGCAGCTGCTCTCATCTCCCATCTTCAAATACTACATGTAGCAGGAAGACAGAATACAAGGTGTTCCCCACCAGTGGTGCCTGAGTGTGGGAATGTGATTCACAGACAGGTCTAAGATTTCTGCCCTCCTTAAGTCCTCTAAGGGTTTTCCTGCACAGGTTCCAGTCATTTTAGCCCCAACCCAATATTTATCACAAGTATCAGTTTTTTCTTTTCATCTGCTGAGAGGCAGGAATGACATGCCAGATTACTCTCATGTTACCTTGAACTGTGGGAGAGATGCCCAACAATCACACCTTATTTAGTGGTCTGGTTAGGAGTAAATAGAAGGATGGAGGAAGTCATGTGTCTCATGTGGTGTTTTAATTCATACCTTTAATGCTTTACACTCAGCCAGTATTTATTGTTCTAGCTGTGTCAGGCAGGGACTTTGGCTAAACATCTTAAAAGATGGAAAAATGAATAATTATCTCTAATTCTGATTACCAATGGATTGAGATAGGCATACACCTCAATCAAAATAATAGAAAGCAGCCTAAGAAAAGTTATTTTGGAACACAAGCGACGGAAAACTTTGTTCTGGTTGTGATTTTTTTTTTTTTTTGGTGATGGAGTCTCGCTGTGTCGCCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACTCCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAGGTGCCTGCCACCACGCCTGGCTAATTTTTGCATTGCTTTTTACATATTTGATAGCAGTTTTTTTTTTATTGGTTACAAAACCTAAGCCCATATACAGAATTAGGAACACAGTTAGATGCCTCTTTTGAAAGAACATTTTAGTCTTTTTAAACTGAGTTAAAAAAAAAAAACCATGCAATTTTCAAACACTGTTTTGAAAACTTAAAAGTGCAGCAATATACTTAGTTTCCTTTATCTACAAAATGGTGCAATTCCACTTCAAAACTGGTAAGGTCACAACAAATTGAATCAAGGAAATGCATACAAATGTCTGCACTACTTGATGCTAATGTTTATTTGAATGTTAGTTTGTACTTTCAAACATGAGAGGAAATAGGAATCATCACAGTAGAGGCCCAATTTTAATCATAATGTGTGCAAATTTAAATTAAAATTAAAAGGTAGTCAGTTAAGGAAAGTCCAGAAGAAACTAAACTGGAAGGAGTACAATTCACAATATCAAGAAGATTTGGACTTCAAGGGTTTCATCGAAGTTTGTGACCTTAATTAGCTTTTACGTTGTTACAGTTTTTATATTTTTAGTAGAGCTGGGGTTTCACCATAATGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTTCTGAGATTACAGGCATGAGCCACTGCGCCCGGCCTGGTTGTATGTATTTAAGAAATTTTCACAGAGCAGGTAGCATTGATTTGGGCCTTGAAGAATGTCTTAGGTTTTTTGTGTAGATTTGGGGAAAGGATACAAAAGTGGGTGCCTTGAAGAAAATGGGGCATCTTTAGTCTGACTGAGAATCTTTAGTCTGAAAGACTAATAATGTGGTGGGTGGGTGGGTGTGTCCCAGGTATAAAGTAGCAGTACCCATTGTTGAGAAAATATGCTTTGGGCAGATTGTAGAGTGCCTTGAAGTCCATGGTGAAGTGTTTGGATTTTTCCTTCTTGTCAGTGGGGAACCTTTGAGGATTTTTGAACAAAGGAGTGGCCTGTTAGAGCTGTGCTTTTGGACCAGTATTGACCATTGGTAGAGTTTTTTGGAGGGGGGAGTGGGATTTAAAGGATTCTCCATTTAAATACTTTGTTCTCTCATACATAGTTTTTGATCACTGGGAAACATTAATGCCCAAAGCGACTTGCAGCAGGTCCTCCTCACTAAGGAGGCTTCAGGCTGCTCTTGAGTCACTCTCAGTGTCCCTCTTTGTGAACCTTTTTGGGGGAGGAGCCACATTGAGTGGGTCTGCAGGCAATTTCTTTATTTGGGAGATTTGGGGAGATGCAAAGCTCATGGCTCTTTTCCTTCCCCAG
Seq C2 exon
CTCTGCTGTCTCAGGATGCTGAGGACGTAAAGACCCAGAGAGAAAGTTTAGAGGATGAAGTGACCCCTGGACTCCCGACAGCAGAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815-ZNF642:NM_198494:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=NA C2=0.914
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(91.3=97.7)
A:
NA
C2:
PF0202312=SCAN=PD(10.4=16.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)