BtaINT0164445 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21401494-21403087:+
Coord C1 exon
chr7:21401494-21401589
Coord A exon
chr7:21401590-21402975
Coord C2 exon
chr7:21402976-21403087
Length
1386 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CCTTTTCTGTCCCGGCGCAGGCC
3' ss Score
9.81
Exon sequences
Seq C1 exon
GCAAGAGCCAGCGGCCTGCAGCCCTGTGTGATCGTCATCAGGGTCTTCCGGGACCTCTGCCAGCGCGTGCCCACCTGGGGGGCCCTGCCGGACTGG
Seq A exon
GTAAGACAGTGCCAAGGGGCCAGCCTTGCTTTAAGAAGCCCCCAAACCCTGCCAGGCTACAGCCCTGTTAGGCTGAGCCTTGTATCGTTGTCCAGTGTCCAGCTTTCTGAGAAAAGGCTGGTGTTGGTCTGAGTCCCAGGGGGAGGCTTGCCACAGGACACGGCCTCATTTGACTGTATTATCTTAAACCCACAACCTTGCAGGCAGAACCAGGAAGCATGTAAATTCAAGGGCACCCCAGCAAAAGCTGGAGTGTTTGCCTAGACCTGCAGGCACTGGTGCAGAGGCCCTGGTGAGGGCAAGAAGCCGGTTCCTGTCTTGGCTCCACTTTGACCTCTAGGCCTGGGGCAGACCTACCTCCTCTGAAGGAGAGAATCCAGTGGCCCTGACACGGCTCTTCAGCTGGCCCTGGACCCCTTCCAGGGGGAGAGGAGAGAGGATGCAAGGGACCCTGGGTACTTCAAACCCCCAAAGTTGCCTCGTGAGACCCCACAGCCCCACCCACTGAAGCCCCCTGCCTCGACTTTCAGGGTCTCATTTCCGAGTGTCCCTCTTCTATCACACGCCCACTGACCTCCCCAGTAACCAACAAATGGTAGGTTTTTAAGGTTTTCACCTTTGACCTTATCCCTGGAAAGTTTGGCCCTGAACTTGGAGGAACACGTGCCTCTTCTCTGCAGCCATCTATAAATAGCCAGTCCATCAGCTCCCATGCCCGTAGGCGGGCTCCTGGACGTTCCCCACACCCCAACCCAGGCTGCCCTTGGCCTTACTCGTCTCCAAAACCAGGGGCTCTGGTGCCCCCCCGACCTCGGCTTCCTGCCTGTGGTCTGAGGAGACGTCCACTCTCAGCTCCACCCCAGGGGGTGGCACAGTGGCTGCCCCGTGCTGAGTGACCAGAGAGGTTCACTCAGATGTTTGCGGCCGGGGGTGGGGCAGTGCGAGGCGGTCGCGCATTTCTTGGAGCCCATTTCCCTTTAAGTGTAGACACGCCCCCACGACAGCTCACACCCCCAACCCTGTCCCCGGGCTCTCCAGGCAGGTGGCTCTTGGAGGAAGAAAGGTTCCTGAACTAGGCCCTAGGATCCTGTGACCCTCAGGGGCCCTCAGGTCACAGAGAACGAATCTCTGAACCCATGTGACACTACTTTGCCATGTTACCATTGATGAGATTTTGCTAATGAGGAAGCTGAAAAGGGAAGGTGCTGAAACCCGCCCATGGCCACGCCAGGGCAGTAAGGTCTGGTGACCCCCTGGGTGGGTGGCTGGGTGGGCCTGAAGGGGCACTAGGCCGGAGCCTCCGGTCCCGTGTCCCCTGGAGACCCGGCTGCCCGCACAACCACTGTCCCCTCAAAGGCCCGGGTCTCCTTTTCTGTCCCGGCGCAG
Seq C2 exon
GCCATGGAGCTGCTGGTGGAGAAGGCCCTGAGCAGCACCAAGGGGCCCCTGAGCCCCGGGGATGCTGTGCGCCGAGTCTTGGAGTGCGTGGCCTCGGGGACACTCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.6=100)
A:
NA
C2:
PF075289=DZF=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCTGTGTGATCGTCATC
R:
CTGTGAGGAGTGTCCCCGAG
Band lengths:
190-1576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]