DreINT0177951 @ danRer10
Intron Retention
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4675510-4675801:-
Coord C1 exon
chr22:4675706-4675801
Coord A exon
chr22:4675622-4675705
Coord C2 exon
chr22:4675510-4675621
Length
84 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
TTGCGTTTTCCTTTATAAAGGCC
3' ss Score
6.42
Exon sequences
Seq C1 exon
GCTCGGGCCAATGGACTTCAGTCTTGCGTCATCATTATTCGGGTTCTGCGGGATCTCTGCCAGCGCATACCAACATGGGGAAAGATGCCAAACTGG
Seq A exon
GTCAGTTAGCTGTGCATGCTAACAATGAACTTAGCTTAAGTTAGTTATGGTCATAACTAACAAGTTGCGTTTTCCTTTATAAAG
Seq C2 exon
GCCATGGAGCTGATTGTGGAGAAGGCCATTAGCAGTGCGTCTGGACCGCTCAGTCCTGGAGAAGCTTTGCGGAGGGTCCTTGAATGCATCGCCACTGGCATTCTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683:ENSDART00000122341:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(13.0=100)
A:
NA
C2:
PF075289=DZF=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCAATGGACTTCAGTCTT
R:
GATGCATTCAAGGACCCTCCG
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]