RnoINT0168817 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11337287-11338057:-
Coord C1 exon
chr7:11337962-11338057
Coord A exon
chr7:11337399-11337961
Coord C2 exon
chr7:11337287-11337398
Length
563 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CACCTCCATGTTCCCTTCAGGCC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCTCGAGCCAGCGGCCTGCAGCCATGTGTGATTGTTATCCGAGTTCTGAGGGATCTGTGCCGCTGCCTGCCCCCCTGGGGGGCCCTGCCGGCCTGG
Seq A exon
GTAAGGCTGCAGGGGTTGGTGAGGAAGCACAGGTGGGGAGGCACAGGTGGGGAAGCACAGGTGGGGAGGCACAGGTGGGGAAGCACAAGTAGGGTTCAGCCACCTACTCGGCACCCACCCATCCCAGAGTGGGTGGGTGTTACCAGGCCCCTTGGGTCACTGTCATGGTTGCCTGCCACCTTAAACCCCAAGCTGGGGGGGTTGGGGATTTAGCTCAGTAGTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGGGGAAAAAAAAAAAAAAAAAAAAAAGCCAAGCTGGGAGGTGAATCCCAGACCCTATGCAGACGTCCCAAGGGTACAGGCTCTCATCACACTGACCTACCAACATCAGGAAGAGGACCCCGGGGTGTCCCCTGTGCTGGCTGCACTGCAGAGGACATCCCTAGGACGTTAACAGTCCGTGTCATAGCACTCTGAACCTGTCTAGCCACACACACTCACCCCAGCATGGCCTTGTTTATCAGTCCTGCCTCTGCCTAAGCCACAGCACGTCCCTGCATGTGGTTGCCACCTCCATGTTCCCTTCAG
Seq C2 exon
GCCATGGAGCTGCTGGTGGAGAAGGTTCTGAGCAGTGCACCCCGGCCCCTGAGCCCAGGGGATGCCATGCGTCGGGTGCTGGAGTACGTGGCCACGGGCGCGCTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.6=100)
A:
NA
C2:
PF075289=DZF=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]