BtaINT0164597 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14221935-14223854:+
Coord C1 exon
chr6:14221935-14222062
Coord A exon
chr6:14222063-14223730
Coord C2 exon
chr6:14223731-14223854
Length
1668 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TTTGTAGAATTTTGTTTTAGGTT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTTCGAGTAGTTGGAGTTACCTGTGCAGCCTGCCCATTCCCATGCATGAATGATCTCAAATTCCCTGTGGTTGTCCTGGATGAGTGTAGTCAAATGACAGAACCGGCTTCTCTCCTTCCCATTGCAAG
Seq A exon
GTAACCTAAAAGGTTCTTTTCCAAAGACTCTCGGATGTTACAGTTATTTCAAACATTTCCTCAAACTCTTACCAAACTTTTGTGACAATTCCTAGCAATTCAAGTACTAAACTGATTCTTTAAAAGAATGTGAAAGGAAATTTGAGGGGGGGGAGGAGTTCGTATATCAAAATTTGGTTAGATGACAGTTGAGACACCTGAGTCACATAATTCATAAAAGCCTTGAAAGTTCTAGTGCTGGATTCTGGTGGAACATCGCAGATCTCAACCAGATTAAAGGTGCCTCTTTAGTCACAGTTTAAGAACCCAACTCTACTGAAGAATGTTCTTTAGTTCTTACCTTGATATAATTCCAGTGTTTAGGTTCGAAAATAGTTTTTAGATTATGAAAGTAGATAACATATATAAAGAAAAATAAGTTGAAAATGAAAAATTATCTACTAAAATGGAGGAAACTATGAAATCTTCTAAGCTGTCTCAGCCCATTGGAAACACTGCTTTTAAAGCGTCCCTTTCTGAGGAATCCTAAAGGCAGAGGAGGGTGTGCTCAACTAGACCAGACTAATGGGCTCGAGTCCTAGGCCCTGTTCTGTCCCCCTTGGTTGTTTTGCGTTTTCCTTCTTTATAGTAAATGTTTAATCTTCTGATTTCCAGTTTACAAGTGTTGAAAATACACAAGAAAGATTTTACTTCACCAGTACTTTCATGTTAATATATTTTGATGCAATATATATGGCAATAAATCTCTATACATCATAACCAAAAGTATGGGGTTTCCTCCCTTAAAAAAAATGGGGATGTAACATTAACAAACACTTTTAAAATAAAGCACACAATTATTTTGGTGAATTTACAGATCTTTTTCCCCAGGCATAAAGGATGAGGGAGGAGGGCATCAACTGTCATGCTCTGGCTGAGACTTGGGAGGTTCCTGCATCAGGGGGCTTTCAGGGTTTAAACTGGGACAGTCCTGGGCACCAGGACCAGTTGGTCACCCTAATCAGGAGCCAGGGATGGAGAGAGTAAGGCCCTGTGTAGAGGGTAGAGGAGCAATATTTGTGGAGCATCTACTGTATACTAAACACAATACATGCTTAAATCCTTACAACAGCCATGCAAGGTATTATTATATCAAGGTTACTGATAAAAATACTGACACTGTAGAGATTAAATAACTTGCTGTGTCCATAGAATATAATAGAGCTAAAACTTGCATATAGGTTTTTCTACAAAACTTGGATTTTCCCCCACTATATATTACTCCTATTTAAAAAGACATTTAACCCATGAGAACCTAATAGGCTTCATCTCTAAAACAAAAGTTTAAGCTAAATGACTTCTAAGAAAGTTTTTAAGTCTTAAGTTTATAGATTCTAAAAATCATTATTCTCAAAGTGTGTTGTGTGAAATACTGATTCCTTGCCAAGGCAGGGGACACTTAATAGGTTTTATGTGGAGACAAGTAAAGTTATGTAGAGGATTCTTTACTTACTGCATAACTTTTTAAAGCCTTTGAATACACCTAGTAGCACTATTAAGCCTTGTATGTTCTCAGTACATTTCATGGTATTCAGATTCTTTGAAATACATTTTAGAAAATAGTGCAGTAAATTTTGTTAATGCATATTTTTCTCGTTGCTTAGATTAATTTGTAGAATTTTGTTTTAG
Seq C2 exon
GTTTGAGTGTGAAAAGCTGATACTTGTTGGAGATCCCAAACAGCTTCCTCCTACTATTCAGGGTTCTGATGCAGCTCATGAAAATGGACTGGAACAAACTCTTTTTGACCGACTCTGCTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198:ENSBTAT00000017567:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(17.9=100)
A:
NA
C2:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTAGTTGGAGTTACCTGTGC
R:
TAAGCAGAGTCGGTCAAAAAGAGT
Band lengths:
246-1914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]