RnoINT0168986 @ rn6
Intron Retention
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231938497-231940877:+
Coord C1 exon
chr2:231938497-231938624
Coord A exon
chr2:231938625-231940502
Coord C2 exon
chr2:231940503-231940877
Length
1878 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TCTGAATTGTTTCTTTGTAGGTT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GCTCGCGTTGTTGGCATCACCTGTGCGGCCTGCCCATTCCCGTGTATGAATGACCTTAAGTTCCCTGTGGTTGTGCTGGATGAGTGCAGTCAAATGACAGAGCCAGCCTCACTCCTTCCTATCGCAAG
Seq A exon
GTAACCTGAACGACTCCCTTCCCAAGAGTACTCATGAGTCAATTATTTCAAACATTTCCTGAGGTCAGACTCCACAAACACTTGTCGGAATTTTTAGCAATTCAGTTACTAACATTAATTTTATAAATAATAGAAGCTTTTTGAAGTGAATATATCAAAGTTTTGTATAGTTTAGCCATTGGACTTAACCTCACAGTCTTTACGACATAGTCCTTAGAGCACTACTGCTGGGACATTATAGGACTTCCCTTATTTGTCAGCTGCATTAATGGTTCCGAACTCCACTGGGTAATGTCATTCAGTGTCCTTTCTTTTGTATGATTTGAGTGGTTTAGCTTCTGAAAATATTTTTTTTTAGTTTATGAGGTTATATATTAAAAACCAAGTTGACAATGAAAATTTGTCCCCAGAAACTGGAGAGGGAAACCTAAGCTGATAACAGCCATTAGAGAATTGTGCTTTCAAAGCATCTGTGAGGGCTGAGATGTAGTTCAGTGGATAAAACATGTTTAATGTGTGTTATCTGAGTTTAATCCCCAGTACCATGGAAAATAAAATAAAGCATGTGTTAAGGAAGAGTCCATCCACCACAGTGAGATTCAGGAGGCCTTGCTCATCCGCCGCCCATGTGTCCATAGGGCGCCAGTTGTCAGGGTTTGCCTGGGACCCTGGTTCAGCTTTTACTGAAACGATGCTGGGCAGTCAGGGCGACCTGGTAACTTCCCAGCAGCCAGGTTTGCAGGAGCACTGAGGCCCTGGGTGCAGTACAGGGGTAATGCAGTTCTGCTGTGTTCTGAGCACACTGGCCTTCATTTGATCCTCATGACAGCCATGCACAGAGTCACTGCCTCTAGGTTACTGAAAGAGTGAGGAGCAGGAGAGCCACAGACAGGATAGATTTTGAGATCTGGGGATAGATTTGTCTGTGAAACTAAGACTTCCCCACACTGTCTTATTGCTATTTAGAAAGACAGCTCATCCCGAAGGCCTTTCTTATCTCAATCCCTAAAACAGACTTTAAGCCAAGGAATTCCAAGACAGCTTCAGAGTTTCTGAGGTCTTAAGATCACTGTTTCTCAAATGTGTTCTGGGAAGCACTGACTCTACACAGAGGCAAGGGATGCCTAATATATTTTACGTGGAAAACTAAGTTAAGTGAAAGCATGCGCGACCTCATGGGCATGTATGTGCCAGTGCTCACCCACGTGTGCTCATAGCTGGGTGTGCATGTGCGGGACACAGGGAAACGTCCAGTGCATTCCTTCTGGCCGCTTCACATTCTTTTCTTTCTTATTTTTTTATTTTTAAAATGTGTTGATTTTTTTTCTGTGTTTGAATATTTTGCTCGTGTCTGTGTCATGTGCACCCTAGAGTTGGAGTGGAGTTATGGACTACTGTGAGTTGCCCTCCTGGCATTGAACCTGGGTCCTTTGCAAGAACAAGTGCTTTAACCACGGAGCCCTCTTTCCAGCTGTCTTCACCTTATGGATGGAGATGGGTCTCACTGAGTCAGTCTAGAGCTCACTGTCTCTGCCAGACTGGCCAGCGAGCCTCTGTAGTCCTCCTGTCTCTAAGCTCCTAGCACTGGAATTAGGGATTTGTGCTGCCGCCACTGTGCCTGGCTTCTGTGTGAGTGTGAGGGATTTGAGCTCAGCTCTTCAAGGTACTTTAATCACTGAGCCATCTTCCTAACCCAAAGACTCTTGGAGGTAACATTTCAAAGCCTTCAACATGCTACTGAGCCCCACTGAGATTGCTAGGTCTTAACAATGTTTCCTGTCTTGGAATTCTAAGAATACATTTTGGAAAGTACAATGAGTGGTATCTGTATATCTTTTCTCTTCGCTTAGATTAATTTTCTGAATTGTTTCTTTGTAG
Seq C2 exon
GTTTGAGTGTGAAAAGCTAATTCTTGTTGGAGACCCCAAACAGCTGCCCCCTACAATTCAGGGTTCTGATGCAGCTCATGGAAATGGACTGGAACAAACTCTTTTTGACCGACTTTGCTTAATGGCACGTGCTTCTAAATACTTTGAGTTACCACTAAGTGTATACTGTGTGGGTGCATAAAGGATAAAGATATGGTACCTTATCCTTGTTCTTAAGTAGTTTATAATGGGAGTTCTTTAGAAAGTACTCTTCTTAAAGACGAATGGAATCTCTCTGTTCTAATACGCCTTAAAACTGTTTCTCATTGTGTCTCTGTGTACGTCACCCTCTGTTATCCAGGAGTGTCCAAGGTGGACAGTGATGTGGCATTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980:ENSRNOT00000014695:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(17.9=100)
A:
NA
C2:
PF130861=AAA_11=PD(9.4=36.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCCTCACTCCTTCCTAT
R:
TGACGTACACAGAGACACAATGA
Band lengths:
352-2230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]