RnoEX0101903 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231938497-231943497:+
Coord C1 exon
chr2:231938497-231938624
Coord A exon
chr2:231940503-231940626
Coord C2 exon
chr2:231941794-231943497
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTGAATTGTTTCTTTGTAGGTT
3' ss Score
9.26
5' ss Seq
ATGGCACGT
5' ss Score
2.14
Exon sequences
Seq C1 exon
GCTCGCGTTGTTGGCATCACCTGTGCGGCCTGCCCATTCCCGTGTATGAATGACCTTAAGTTCCCTGTGGTTGTGCTGGATGAGTGCAGTCAAATGACAGAGCCAGCCTCACTCCTTCCTATCGCAAG
Seq A exon
GTTTGAGTGTGAAAAGCTAATTCTTGTTGGAGACCCCAAACAGCTGCCCCCTACAATTCAGGGTTCTGATGCAGCTCATGGAAATGGACTGGAACAAACTCTTTTTGACCGACTTTGCTTAATG
Seq C2 exon
GGTCACAAACCCATTCAGTTGAGAACCCAATACCGTTGTCACCCTGTGATCAGTGCCATAGCTAATGATCTGTTTTATGAAGGAAACCTGGTGAACGGCATTTCAGAGAGAGAGAGAAGTCCTGTACTGGAGTGGCTGCCCACGCTGTGTTTCTATAACGTCACAGGAACAGAGCAGGTGAGTGACATCAGTGTTGATGGGAATCACTACTTAATTTCTTGGTTTAATTTTATTGTTGTTGTTTATATGGTCTCATTCAGTCTTCCCATAGCCTTTCTGGGAAGATAATTTTGGATCTGTTTCTTGCTCCAGGTTGAAAGAGAGAACAGCTTTGTGAATGTGGCAGAAGCTGCTTTTACCCTCAAGCTAATCCGATCACTGATTGCAAGTGGACTAGAGGGCTCCATGATTGGGGTGATAACATTATACAAATCGCAGATGTATAAGGTGTGTGCAGTATATGATGATGTTTATCGCATATTAAACATCATGTTCTATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'34-28,'34-27,35-28
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=NA
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(17.9=100)
A:
PF130861=AAA_11=PD(9.4=36.1)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCCCTGTGGTTGTGCTG
R:
TCACCTGCTCTGTTCCTGTGA
Band lengths:
252-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]