BtaEX6030024 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14221935-14225333:+
Coord C1 exon
chr6:14221935-14222062
Coord A exon
chr6:14223731-14223854
Coord C2 exon
chr6:14225157-14225333
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTGTAGAATTTTGTTTTAGGTT
3' ss Score
7.1
5' ss Seq
ATGGTACTA
5' ss Score
3.21
Exon sequences
Seq C1 exon
GTTCGAGTAGTTGGAGTTACCTGTGCAGCCTGCCCATTCCCATGCATGAATGATCTCAAATTCCCTGTGGTTGTCCTGGATGAGTGTAGTCAAATGACAGAACCGGCTTCTCTCCTTCCCATTGCAAG
Seq A exon
GTTTGAGTGTGAAAAGCTGATACTTGTTGGAGATCCCAAACAGCTTCCTCCTACTATTCAGGGTTCTGATGCAGCTCATGAAAATGGACTGGAACAAACTCTTTTTGACCGACTCTGCTTAATG
Seq C2 exon
GGCCACAAGCCAATTCTGTTGAGAACTCAGTACCGTTGTCACCCCACAATCAGCGCTATTGCTAATGATCTGTTTTATGAAGGAAATCTCATGAATGGCATTTCCGAAACAGAGAGGAGCCCTTTACTGGAATGGCTCCCAACTCTGTGTTTCTATAACGTAAAAGGACTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(17.9=100)
A:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)
C2:
PF130871=AAA_12=FE(31.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCATTCCCATGCATGAA
R:
CACAGAGTTGGGAGCCATTCC
Band lengths:
248-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]