Special

MmuEX0001502 @ mm10

Exon Skipping

Gene
ENSMUSG00000051278 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127611784-127615303:+
Coord C1 exon
chr3:127611784-127611911
Coord A exon
chr3:127613343-127613466
Coord C2 exon
chr3:127615127-127615303
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTGAATTGTTTCTTTTTAGGTT
3' ss Score
10.64
5' ss Seq
ATGGCATGT
5' ss Score
0.6
Exon sequences
Seq C1 exon
GTCCGAGTGGTTGGCGTTACCTGTGCAGCCTGCGCATTCCCGTGTCTGAATGACCTTAAGTTCCCCGTGGTTGTGCTGGATGAGTGCAGCCAGATGACAGAGCCAGCCTCCCTTCTTCCCATTGCAAG
Seq A exon
GTTTCAGTGTGAAAAGCTAATTCTTGTTGGAGACCCCAAACAGCTGCCTCCTACAATTCAGGGTTCTGATGCAGCTCATGAAAATGGACTGGAACAAACTCTCTTTGATCGGCTTTGCTTAATG
Seq C2 exon
GGCCACAAACCCGTTCTGTTAAGAACCCAGTACCGTTGTCATCCTGCGATCAGTGCCATAGCTAATGATCTGTTTTATGAAGGAAGCCTAGTGAATGGCATTTCCGAGAGAGAGAGAAGCCCTGTACTGGAGTGGCTGCCCACGCTGTGTTTCTATAACGTCACGGGAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278_MULTIEX2-11/11=10-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.138 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF130861=AAA_11=FE(17.9=100)

							
A:
PF130861=AAA_11=PD(9.4=52.4),PF130871=AAA_12=PU(5.9=26.2)

							
C2:
PF130871=AAA_12=FE(31.0=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000044432





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000143761
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr4:112547285-112547408 
HIGH PSI
HsaEX0010989
(ZGRF1)
Human
(hg19)
chr4:113468441-113468564 
ALTERNATIVE
HsaEX0010989
(C4orf21)
Rat
(rn6)
chr2:231940503-231940626 
ALTERNATIVE
RnoEX0101903
(Zgrf1)
Cow
(bosTau6)
chr6:14223731-14223854 
HIGH PSI
BtaEX6030024
(ZGRF1)
Chicken
(galGal4)
chr4:56727176-56727299 
HIGH PSI
GgaEX0018151
(ZGRF1)
Chicken
(galGal3)
chr4:58685670-58685793 
HIGH PSI
GgaEX0018151
(C4orf21)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGCATTCCCGTGTCTGAATGA

				
R: 
ATAGAAACACAGCGTGGGCAG

				
Band lengths: 
252-376

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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