BtaINT0164601 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14226322-14227106:+
Coord C1 exon
chr6:14226322-14226583
Coord A exon
chr6:14226584-14226758
Coord C2 exon
chr6:14226759-14227106
Length
175 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATGTTTTGTATCTTTTTAAGGGA
3' ss Score
9.51
Exon sequences
Seq C1 exon
CTCTGTCATCTACTCAGTGCGATGGACTTCGACCATCCCAACTTGAAAGCTGTGCAGGTGTCCACAGTAGATGCTTTTCAGGGAGCTGAAAAGGAGATCATTATTCTGTCCTGTGTAAGGACCAGACAAGTAGGATTTATTGATTCAGAAAAAAGAATGAATGTTGCATTGACCAGAGGAAGGAGGCATTTGTTGATTGTAGGAAATTTAGCCTGTCTGAGGAAAAATCGACTATGGGGGCGTGTGATCCAACACTGTGAAG
Seq A exon
GTAAAACAAAAATGTATTTAATTCAAGCATTTTGAATTAAAACTGACTTTTGTGTTAGTGCCTGGGGTGTTTCGGGTAGGAACTACTCTGAATTTGCCACTGTGGGTGATGAATGAAATGATGAAATGGACACCACTGTAAAATATGGTTGTCTCATGTTTTGTATCTTTTTAAG
Seq C2 exon
GGAGGGAAGGTGGATTGCAACATGCAAGCCAGTATGAACCACAACTGGACCATCTCCTTAAAGATTATCTTGAAAAACAAGCAGAAGAAAAACAGAAGAAAAAGGCTGAAAAAGATAAATTGACAGATAAAAAATCTTATTCACAAAAAGACATGGTATAGTTTGTAAAGTTCAAATTCATTTTACACTGTACATTTGTATATTTTTATTACTCCCTAACCCTTGTAATTGGGGGGAAAAAAAGATTTAAATATAAGTAAAATCTGCTCTTCATAAAAAGTGTAATTAAGATAGGCAAATGTTGAAGGAACTATAAAATCTCACCAATAAAAATTCTTTCTGAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198:ENSBTAT00000017567:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.434
Domain overlap (PFAM):
C1:
PF130871=AAA_12=PD(37.4=79.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAACTTGAAAGCTGTGCA
R:
GTTGCAATCCACCTTCCCTCC
Band lengths:
248-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]