RnoINT0001579 @ rn6
Intron Retention
Gene
ENSRNOG00000053387 | AABR07013288.4
Description
NA
Coordinates
chr2:231942921-231943497:+
Coord C1 exon
chr2:231942921-231943182
Coord A exon
chr2:231943183-231943360
Coord C2 exon
chr2:231943361-231943497
Length
178 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTATTTTCTGTCTCTCTCAGGAA
3' ss Score
11.73
Exon sequences
Seq C1 exon
ATTTGCAGTTTACTCAGTGCTGTGGACGTTGACCATCCAGATGTTAAAGCTGTGGAGGTGTCCACAGTGGACGCCTTTCAGGGTGCAGAAAAGGAAATCATTATTCTGTCCTGCGTGAGGACAAGACAAGTAGGGTTCATTGATTCAGAAAAACGAATGAACGTTGCATTGACCAGAGGAAGGAGACATTTGTTGATTATAGGAAGTTTGTCTTGTTTGAGGAAAAATCAACTATGGGGGCGCGTGATCCAACACTGTAAAG
Seq A exon
GTAAAAGAAAAACGAACCTATTTCAAGCATTTTAAATTAAAACTGGTTCTGTGGGGCTAATCCTGGGTGGTTTGTGAGGAATAGCTGGGCCCATGGCCCCTTGGGAGACGCCAGAAGGGACAGTAATGTGGAAAGCCCCGAAAGGTAAAGAATGATTCCTATTTTCTGTCTCTCTCAG
Seq C2 exon
GAAGGGAAGACGGACTGCAGCATGCAAGCCAGTGTGAACCACAGCTGGACCGTCTTCTGAAAGAGTATTTAGAAAAACAAGCAGAAGAAAAGCAGAAGAAAACAGAGAAAGAGAAATTAAAGGATAAATCTCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053387:ENSRNOT00000091475:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF130871=AAA_12=PD(40.0=79.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTCAGGGTGCAGAAAA
R:
TTCAGAAGACGGTCCAGCTGT
Band lengths:
252-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]