BtaINT0164626 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016757 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr25:36945053-36947272:-
Coord C1 exon
chr25:36947119-36947272
Coord A exon
chr25:36945145-36947118
Coord C2 exon
chr25:36945053-36945144
Length
1974 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GCTCCTTTCTCCTCCTTCAGCTC
3' ss Score
9.93
Exon sequences
Seq C1 exon
GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTGCAGGAGTCGTCGAGCTTTGACCTTCCTCATGAGCCCACCCAGTCCCATTTCAAGCATTCATCTCGGAAACCCCGTCTGTTACAACCTCGAG
Seq A exon
GTAAGAGGCCAGGGTTCACGTGGGTTGTGAGGCGGGGACACGCCAGTCAGATGCGTCTGTGGTGCTGATGCCTGTAGTGGAGAAGCGTGTTTGTTTCTGTTGTCATTGCTACTACGTATCAGAGGAAACATAACCTGCAGACCAGTTTCATGAGTTAGTGTTACTGAGGAGGTAAGTGGAATGTGCATAATAAACTTGAGTGGACATTATATTATTTGTTGAATTGTTAGCATTCTGGGTGTCTAGCAGACTTTTTATTAACAGGAAAGTGCTCAGAAGAGATGATATATATCCAGCACTCTGGTATGTCATACATTATCTTGAAAAGGATCGTTTTAAAATTGATTTTATCTGGGACTTCCCTGATGGCCCAGGGGTTAAGACTCTGCTTCCTCGGCACTGTTCAGTGCGTGCTGAGGGAAACTGGATCCTCCATGCCACACAGCGCAGCCGAAAAAGAAATAAACTCATTTTCTTTAAAATGTATAAATACTGTATAACATCACTCTTTTTCTAGGTTATTTTCAGAAATTCCAAAGAATGGGAAAAGGATGGAAAAAATGTTTTGGTTGAGGAACATGAGGCAAAAAAAAATGATTTCAGAGTCATATGAATAAAAATTAGTTTTTTTCTCTTGAGGGAAATCTTAACGTATTTTATCCACTTTTAAAACCAAAGTAGGTACATAGACTATCAGTAAATAATAATAACATGCTAAAAGAATGATTGTTCACGAGCTGATAAACACACAGTCCTCACCCAGTGTGTCTGTTGTGGTGACGTGCAGGGCGGGCGTGTAAAGCTGAAGGGGGCATCCTTGTCGCTGCGTTCTGGAGGGCAGCCAGCAGTCATAAGCTGGAGAAGCCCCGCCAACCAGCCAGATGCTGCGATGGTAGTCCACCACGGCCCACCCCTCCCGTTGCTTCCTCCTAGGGTGAAATCAGGAATGGAAAAGGATGTTCATGGTTTTAAATGCCAGATGAGGGCTTCAGATGATCAGTAACAGCCTTAGAAATCCTGGAATAGGTACTTGTTAGGTAGTAGATACGCACTTATTTTTAGTTTCCTCTTTGTGCTGATTATCTTCGACCGGTGTTTCCTCACTCTTGTAAGGTTGGAGTGCTAGGTATTTGATCTTTTTGGACACTTTGCTCTAGCTTTTAGTAATTCTGTTTCAGAATGATTTTTCTAATATCTTTGCAATACAGTAACATCATCTGTTTACCAGTAACATTTCCAAATCTAACATTACTTGGCAAGGGAAGGTTTTGATTTTGCAGTCTCCTAAGAATTTTCCAGTTTTATACATGGCAGTTAGTGTGATCCTATATTGAATATGTCTTTTATTAGAAGAGTATCATCAACCCATGCCTTTATACGCTTGGAAATATCTCATCAGCATTCAGACCCTGTGAACGTTTGATCCAAAAACTGGTCACGTGAGGGAGAAAGTAGAGGGGCAACAATTGGCAGAAACTTGAAACTAAGAAGAGCCGCTTCCTTCTCTGTTTCAAGACATTACTGCCAAAGATTTTTAAAACTTAATTTTTCACAACTGGATGGGAATCTGAAGTCCTAGTACACGTTCCTTGGACTGGAGAAGGTTAAATTATGAGCCAGACCTGACTCGAGCTGAGTGTTGCCTGCTTCTGTGGCTGGGAACAGGAGCCTGGTTCTGGCTCTGGCTCTGGCTCTGGCTCTGGCCTCTCAGCAGGGGACGTTAGGCAAGTTGCTTACCCTTTTAGGGCCTCTGTTTCACCTTCTGTGACTCCTTGTTCCTCCTGCTCAAGAACAGAAGTCTTGGGAAGACACAGCTTATGCTGGCCTTCTTACAGTCCCTGTAATTATCAGTTCTGTAGTTCCTCGTTGAACATCAGGCACTCTGGTACAGGAAAAGAGGGTGCCCTGGGCCCTTATTCGAGAGGGACCCAGAGCAGAGCTGGCTTCACTCACAGCTCCTTTCTCCTCCTTCAG
Seq C2 exon
CTCTCCCTGCCACCCACGTTCCTGCCCCTCATCCTGAGGGGGCTCCCAGAGACCAGGCGATGGCATCTGCATTGTTCTCGGCAGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016757:ENSBTAT00000029042:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.1=1.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAGGTCAAGTTCATGG
R:
CTGGGAATCTGCCGAGAACAA
Band lengths:
246-2220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]