HsaINT0185857 @ hg19
Intron Retention
Gene
ENSG00000106261 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:13101]
Coordinates
chr7:99621777-99627575:+
Coord C1 exon
chr7:99621777-99621930
Coord A exon
chr7:99621931-99627483
Coord C2 exon
chr7:99627484-99627575
Length
5553 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GACCCTTTCTCCTCCCCCAGCTC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GTCCCAGGTCAAGTTCATGGACCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTTCAGGAGTCCTCGAGCTTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACATTCGTCTCGGAAACCCCGCCTCTTACAGTCACGAG
Seq A exon
GTAAGAAGCAAGGTTTCATTTAGGGGAAGGGAAATGATTCAGGACGAGAGTCTTTGTGCTGCTGAGTGCCTGTGATGAAGAAGCATGTTAGTCCTGGGCAACGTAGCGAGACCCCATCTCTACAAAAAATAGAAAAATTAGCCAGGTATAGTGGCGCACACCTGTGATTCCAGCTACGCAGGAGGCTGAGGTGGGAGGATTGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTGTAATCATGCCACTACTCCAACCTGGGCAACACAGCAAGGACCCTGTCTCAAAAGCTACTTACAGAAAAGAATTAGGCTCGGCACGGTAGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCTTGTCTCTACTAAAAATATGAAAATTAGCCAGGCATGGTGGCACATTCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTAAGCCGAGATCGTACCACTGTGCTCTAGCCTTGGTGACAGAGCGAGACTGTCTTAAAAAAAAAAAAAAAAAAAAAAGAATTAATTAAAAATTTAAAAAAAAATGAAAAAAAGCTGCATGCTTGTTTTTTGTTTTTAGTTATTCTACATTGTTGTCATTATTACCAAATATTGGGGAAAATACAACTTACAGACCAATCTCAGGAGTTAAATGTTACTACGAAGGCAAATGAACTATGCGTAATGAACCTGGTAGGCATTATTTATTGAATTATCAGCATTCCAGATGTCCAGCACATTTTTAATAGGAAAGTATTGGGAACAGATGTCATTATTTTCAGCCTAGGTTTTAAAACATTTTAGTATGTCATGAATTATCTTCAAAAGGATCATAAATCTTTTTTAAAGGTCCATTTTATTTAAAATATATAAAAATAATCACTGCACTGCAGCCTGGGTGACAGAGAGTCTGTTTCCAAAAAAAAAAAAAAAAACTATAGCATCAGTCTTTTCTAGGTTATTTTCAGAAATTTCAAACAATGGGAAAAGAATGGAAGAACTTTTGAGGGGAGTTGAGGAACACGAAAAAAGATCAGTTCACAGTCATATAAATAAAAAGTCATGTTACTTGTTTTTTCTCTTTTGACGGAAATATGTAATACATTTATCCAGTTTTAAAATCAAAGTATGTGCTTAGAATGTAAAGACAAGGAATGCTAAAAGTACATTTATCACTTAATGGCAGGGATAAGTTATGGTAAGTGCAATGTTAAGTGATTTTGTTGTGCGAACATCATAAAGTATACTTATACAAACCTAGATGGTCTAGCCTTCTCCACACCTACGCTACAAAGCTGTACAGTATGTTACTGTACTAAACACTGTAGGGAATTGTAACACAGTGGTAAGTATTTGTGTATCTAAACATCGAAAAAGTAAAAACAGAGTATAAAAGATTTTTAGCCCAGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACTTGAGGTTAGGAGTTTGTGACCAGCCTGGCCAACATGTTAAAACCCGGTCTCTACTGAAAATACAAAAATTGGCTGAGCGCAGTGGCTCACACCTATAATCCCAGCACTTTAGGAGGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTCGAGATCAGCCTGACCAACGTGGAGAAACCCCGTCTTTACTAAAAATACAAAATTAGCCAGGCCTGGTGGCAGGTGCCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTCAGGCAGCAGAGGTTGCGGTGAGCCAAAATCGCACCATTGTCATGCCATCGCACTCCAGCCTGAGCAACAAGAGTGAAACTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAGTACACCTGTATGGAACACTTAACCATGACTGGAGCTTGCAGGACCGGAAGTTGCTCTGGATGAGTCAGTGAGTGAGTGGTGAGTGAATGTGAAAGCCTAGGACACTACTCTACCATAGACTGTAGAAACACTGTACACTTAGGCTACACTAAATTTATCTTTAAAATTTTTGTTTCTTCAATAATAAATCAGCCAGGCATGGTGGCTCATGGCTTAATCCCAGCACTTCGGGAGTCCAAGGTGGGCGGATTACTTGAGGCCAGGAGTCTCAGACTGGTTTGGCCAACATAGTGAAACACTGTCTCTACAAAATAAAAAAATTAGCCAGGCGTGGTGGTGCATGCCTGTAATTCCAGTTACTCAGGAGGCTGAGGCACAAGAATTGCTTGAACCTGTAGGCAGAGGTTGTGGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAGAAAAAAAAAATAAATAAATAAATACAAATAATAAATTAGCTTACTGTAACTTTTTTACTTTATGAACTTTTTGATTTTTTTAACTTTTTGACTGTTGTAATAACATAACTCAAAAGACAAACATGTTGCACAGCTATACAAAAACATTTTTTATCCCCCTATTCTATAGGGGTTTTTCTAGTTAAAAAAATTTTTATTTTATACTTTTTAAGCTTTTTTTGTTAAAAATTCATACACCCTCCAAGCTAGGCAACAGAGCAAAACTCCATCTCAAAAAAGAAAAAAAAAGGCCAGGCGCAGTGGCCCACGCCTCTAATCCTGGCACTTTGGGAGGCGAAGGTGGGCAAATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACGCCGTCTGTACTAAAAATACAAAAATTAGTTGGTTGTGGTGGTGTACACCTGTAATCGCAGCTACTCAGGAGGCTGAGACACAAGAACGCTTGAACCCGGGAGGTGGAGGTTGCAGCAAACCAAGATGGCTCCTCTGCACTCCAGCCTGGGCGACAGAGCAACACTCATCTCAAAAAAAAAAAAAAAAGAATTGGTCGAGGCACATTCCTTAACCAGTGTGTTTATTGGTGATGACATTTAAGGAATATTAGACATGGAGCTTAAGGATGCATCCTCTCTTCCGTGCATCCTGGAGGACAGCCAGCAGGTATGTGCTAGAGAAAGCTGTGTAAACTGGTGCACCGTGGCCAGGCGTGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAAGCCGAGGCAGGAGGATCACAAGGTCAGGAGATTGAGACCATCCTGGCTAACGGTGAAACCCCGTCTCTCCTAAAAATACAAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGGGAGATGCTGTCTCAAAAAAAAAAAAAAAAAACACCGGTGCACCGTGATGTTTAACTCCACTACTGTTGATGTTCTTGTAAGGTTTCTCCACACTCTACAAGCAGAAGTCACAGGGCGACCTTAGGAAACTGGAGAGGATATTCATGGTCTTAAGCACTAGATTATAGAGTTTAGGTTGCCAGAGTAACAGTTTCAAAGATCCTGGCACACACAGTTGCTCTTTAGTAAATAGTTCTTAAATAAATTGAGACATGTACATTTATTCTCAATTTCCTCTTTCTTATTTGTTTTCCAGAGTGTTTCCTTACTCTCAGAAGTTTAAAAAATTAAGTACTTGGGGCTGGGCGCAGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGCCAGATCATAAGGTCAAGAGATCGAGATCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAACTAGCTGAGCGTGGTGGCAGGCACCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCAGCAGAATCACTTGAACCCAGGAGGGGAGGTTGCAGTGAGCCGAGATCGCGCCATGCACACCAGCCTGGGTGATAGAGCGAGACTCCATCTCCAAAAAAAAAAAAAGTACTTGGGTACAGTGGCTCACACCTGTAATCCTAGCATTTGGGGAGACCAAGGTGGGAGGATCACTTGAGCCTGGGAGGTCAAGGCTGCAGTGAGACATGTTTGAGCACTGCATTCCAACCTGGGTGACAGAGAGCCTATCTTATTGTTGTATAAAGGTTTGAAATAGGTACAAGGTTTGGTCATTCAGTTTCAAATTCATTTCTCAAATATCCTTGTATCTCACTAACATCATCTGTCTACCAGTAACATTTCCAAATCTAATAGTACTTGGCAAGAGATGGGGAGGGGGTTAAATTGCACAATTTAAAATTTTCATAATTGTTATGCATCACAGTTATTGTGATCACGTGATAATGTTATGCATGTCTTTTGTTGTGTGTCAGCCCCAACTTTTGTCTCAGCATTTGAACCATGCATACATCTTATCAAAAAAAAAAAAAAAAAACAGTATTTATTGTGGCCAAGTGAGGGAGAAAAGTAGAGGGACAAAAACTGGCAAAAACTTAGCCAGAGGTGGCCGGACACAGTGGCTAACACTTGTAATCCCAGAGCTTTGGGAGGCCGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCGCCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGCCGAAAGTTGCGATGAGCTAAGATCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAACTTACCCAGAGCTAAGGAGACCTCCTTACTTCCCTGCCTTTCTGGATATTGCTACTAAAGTGTTTTTTTTGTTGTTGTTTTTCTGGATTTCATTGAGACGGGGTCTCACTCTATCATCCAGGCTGGAGTGCGTGATCATAGCTCACTGCAGCCTCGACCCCTTGAGCTCAAGCAATCCTCCCGCCTCACCTGCCACTAAAGATTTTAAAGCTGTGTTGTGTTTTCCACAAGTGTAGGCATAAATGGGATTCTCATATCCTGGTATCGTTCCTTGGACTGGAGGAAATTAGGAGCCAGACTTGAGCTATGGGCTGAAGGTACCCACTTTTATAGCTGAGAATAGGAACCTGGGTCCCCATCCTGGCTCTGCCACTGGGAATGTGACATTAGGGAAGTCATTTGCAGTCTCAGGGACTCAAGTTTCCCCTTCTTTAAAATAAAAGGGTTGGACCAGGTGATTAGGACCCTTTTATGACTCCTGCTCAAGAGTAGAGGTCTTGGGAAAACTGAGGCCCTGTGTTCTCTCGTTTGTGTTGTCTGGAATTCTGTATTTGGGACCTAAACACTGAACAGTGAACATGCTGGTGCAGGAAGGAACATGCCCCGAGCCCTTCTTTGAGCAAGGCTCAGAGCGGAGCTGATTTACTCACAGACCCTTTCTCCTCCCCCAG
Seq C2 exon
CTCTTCCTGCTGCCCACATTCCTGCACCCCCTCATGAGGGTAGTCCCAGAGACCAGGCGATGGCATCTGCACTATTCACAGCGGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106261-ZKSCAN1:NM_003439:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.935
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.1=1.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)