RnoINT0169016 @ rn6
Intron Retention
Gene
ENSRNOG00000001335 | Zkscan1
Description
zinc finger with KRAB and SCAN domains 1 [Source:RGD Symbol;Acc:1560616]
Coordinates
chr12:19239054-19241883:+
Coord C1 exon
chr12:19239054-19239204
Coord A exon
chr12:19239205-19241791
Coord C2 exon
chr12:19241792-19241883
Length
2587 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GGCCCCTTTCTCCTCCTCAGCTC
3' ss Score
8.07
Exon sequences
Seq C1 exon
GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTTGCCAGGGGTGTGGTGCCTCTGGATCCAGTTCAGGAGTCCTCAAGCTTCGACCATCATGAAGCTGCCCAGTCTCATTTCAAGCATTCGTCTAGAAAGCCTCGTCTCTTATCACCCCGAG
Seq A exon
GTAAGAAGCTGCGTTCACTTGTGAAAAAGAAATGTTCAGGTTAGAGGCGGCTTAGTTGGTAGAGAATCTTGCATGAGGCTCTAGGTTCAATCCCAGCACTGCATAAAGTGAGGCACGGTGATACACTCCTCTGATCCCAGCATTCTGGAGGCAGAAGCAGGTGAGTCTCTTGACTTCAAGGACAGCTGAGTGTGCATAGTGAGTTCCAGGATAGCCATGGCCACTTAGTGAGGCCCTGACTCAAAAGCAAACCAAAAAGGCAAGTGTGGTCCACACTTGGAACACTCAGGACTGGTGATAGGAGGTTCGGGATTTCAGGGTCATCCTTACCCACACAGCAAGTTTGAGGTCAGTACAGGCAGCCCAGGTCAGTGAAGGGATGAGACCTTACCCCATTCTTCCAAAAAAAGGTGGGGAAGTAAATGATCCAAGGTAGAGGTTTCTCGTTCTGTGTCACCAGCTAACTCCACAAAGCAGCATGCTTGTTCGGTTATCTGCTCACAGAGCAATCCTAGACTGAGTGCTTAGGACAGAGGTGAGTGAACTGTGCACTGTGTACTCACTGAACATTATAGCACGTGTTAAGTTGTGTGCAGTCCAGATGTCCAGCAGAGTTCTGAGTGGAGGGAATCAGAAAAAGTGGTAATTATTTCTAGCTTGAATGGTTTGTTTTGAGACAAGATCTTGGTATACAGATAGTCCAAGGCTGGCTTCAAACTCAGTCTTTCCTGTCTCGGCTTCCTGAGTACTAGGATTATAGGTGAGTACCACCAGGCCTAGCTTCCAGCCTGGGTTTTGAAACACTTGAGTTAGCATTTCTTAAATCATTTTTGGTAGGGGTCATAAGTCTTTCTGAAGACTTCATATGTATATTTGGTTTTGGGTTTTTTTCAAGACAGAGTCTGTATATCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAGATTCACCTCGCCTCTACCTCCCAAGTGCTGGGAATAAAGGTATGTGCCACCACCTCCTGGCATAAAATATTTCATACCATTCTTTTCAATCTTTGAAAGGGAAAAGAATGAGAATGATTCTCCTTTTAGACTGAGGAAATGAAAAGAGTACTAGTTTGGGTTATTTCTATAAAAATCTGTTGCATTAGGTTGGTTCCCCAACCACTTTATAGAAATAGACAATAATTTCATCAGAATTTAAAATAAAGCAAGTAGACAGCATATCGGAACAATTGCCAAAAGACTTAGCAATTGAGATCTTGCTATTCTTAGGGGACCAGAGTTCACCTACGTCAGACTACTCACATCTGTGCAACACACACACACACACACACACACACACACACACACACACACACACACAGAGTCTATTTTCTTTAAGTTTCTTGAAGAGTTACAGAAAAGATAAAGTATATTCCTTCACCATTGTCTATTTGCAAGGTCATTTGGAAGAGGAATATTAGGGAAGAGCTTAAAGTAGCATTCTCTCTCCCAGGCATCGTGGAAGACAGCCAGCAGACACGTACACTGTATACGTTTAACTCCACCCGTGTCGATTTCTTTCTCCACAAGCATAAGTTACAGTGGTGTCATTGGGTGCCAGCTGGAGAGGACATTCAGGATCTAAGCACCAGATTGTTGCTCAGGGAGCTAGGGAAATGGTTTTAGATACTGCAAAGAGAGTTGTTGTTTTCAAAGTTGTTATTGAATGGATTCTTTCTCAGTTTCCTCTTTGTCTTCTATCTTGTTTCCTAACTCTGAGAAGGCCCAAGCACTGGGGTCTTGTTCTTGTGTCTTTTGCCTCACAGGTAGTAGCAGGCAGAAGGCGCAGAGACCGAGTAGTCTCTCTCTGTGCTCTTTGGCAGCTCCAACCCATCCTCTGTCTGTCAGGAACATTTCCAAACCTAAGATGGTTGGCAAAGGAAGGAAAAGGAGACATTTTAACTTTACATTGGGTTTCTTTATTCTCCTTACTCACTGCATGCAGTTGGTAGTCAGATGCAGTGTTACGGCTGCCTTTTGTGTGCTTCCCATACCTTTCTACATTCGCACGTCTCATCAACATTTGAACAGTGTGTGTTCTATCAAACAGCCACTGTGGCCAAACGGAACAAGAGTCAGAATGGCAGAAATGGACTTAGAAGGATGAGGGTCCCTCTTCCTTATTACTCTGTGTCCTGTGCGCTTGAAGGTGTGTTGTTCACAAGTATATGCAGAAAAGGGAGTCTGCATCCCGTGCTGCCCTGCACTGCAGTAAAGTACAAGCCAGATGCACAGCTACTGATCCTACAGCTGAGAAGAGTAACCTAGCGTTCCAAGCTGACAGTACAGTCATCGGCCGCTTCAGGGCCTCATTCTCTCCATCTAAAGTTTAGACCTGGTGATTTTAAGGACCCTTTTATGAGCTCTGTGCAGTTCCAGCCTAAGTCTTCCTTCCTATCGACTATAGTCTTGGAGCTATCTTTTTAAGTAGCTAAATATCAAGCAGTGACTGTGCTAGTCTAGGAGGGAGAATGCCAGGCTCTTCACTGAGGGAGGCTCAGAGAAGAACCGGTTTTACTCACGGCCCCTTTCTCCTCCTCAG
Seq C2 exon
CTCTCCCTGCCACCCACGTTCCTGCCCCTCAGCATGAGGGGAATCCCAGAGACCAGGCGATGGCATCTGCACTATTGACCGCAGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001335:ENSRNOT00000045379:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.1=2.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]