BtaINT0164721 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36412025-36414525:-
Coord C1 exon
chr12:36414375-36414525
Coord A exon
chr12:36412198-36414374
Coord C2 exon
chr12:36412025-36412197
Length
2177 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TAAAATCTTATATTTTTCAGGCT
3' ss Score
7.44
Exon sequences
Seq C1 exon
AACAAAGTTCATCAATTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGCTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
Seq A exon
GCAAGTGTATATACAGTGTTGTTCATAACTTTCATTAATATTTAATGTTAATTTTTTGCCAAAATATTTTTGAACTTTATCACTAAATATGTTCAGAGTAGCGGTATAATTTTAGTATAGCTGAACAAAAAAATTGTTTGCTTTTCTACTGTTACTAATACTATAGGTAGATAGATCGCTCGATCTCTGGGCCTCACAGTATTTGATCTCTAAGAATTTGATAACATGTTTTTCCATTACAAGGAAGTTTTGAGGATGAAAGAAAAGAAAAGCATTGCCACACCAGGTCATTTCTAAACAGGCAAATAGTGATCTGAAAGTTGATTTTCCAGGTGGATTAGTTACTGTCCACTGGCTCCATTCCCTGCCCAGTTGACTGCTGGTCTGCAGAGGTATTCCCTGTATCAGTGCGGGCATCACCATAGCCGGAAAAGACCTCCAAGTTTTCAGTCTGGGAGGCCAGGGAGATGCTGGCCCTGGTTACAGTACATCCGGAAATCCTCTTTCAATGTATAGTTTTTGCTGCTCTGGTCCCAGGCGGCAGGTTATAGAGATGAACTCCGTTTCCTCATTCTGATTCTCCAGAGATAGGAATCAGGATTGTAGCTATGGGCTTTGGACTCTTATTTATTATATGTGGCTCTCCCTTCGATTCTTTGGCCCCAGGCACTGGACTCTGCTTTTCTACCTGCTGTCCTCATCTGTTATTTCCCAGTTTTTTTTTTCCCCTTCTTCCTGGATCCTCTTTTTCTGTCGACATTCTGCTGGTTAGAGGCGAGAGCAGGGTTGGGAGATCCTAAATGCAGTAGAGTAACAGCAGTATCAGAAGATTCTTAGTCCATCATCAGGCGTCTTCAACACACGAGGCCATGACTCCAGGCGGCACTGCCTACAGCAGGCATTCCTGCACATTTGGGTCCAGCCCCCTGGAGAAGAGCAGTCACGATTACTGTGAAGATTGTAGCTTAATGAAAAGTAACATATGCTTCACTGAAAAGAATGACTAAATTAATTTAGCTCTTCTACCTGAATTTTTGTGCAGTGGCAGTCTCAGTGATTCACAAGTTGGAACATGTCCTTGTCAAGGGCTTGCACACACATTAATGGTCTTGTACCATTTGGATTATGTAGATTTTATGGAAATGACGGACAATTAGCAACAAATAGATAACTGACATTGAAGAACATAATTTTCAGTTAGAGGAACTTATAGCTTTGGGCAATAAAAGGTTAAAAGGGATGTGTATTTTTTTCTGTTTAATAATATATTTTGTGCTTTCTCTTAACTACACCTAGTTCTCTGCTGGAACCTGTCAGAAATAACAAAACATGTAATACCTGGTACTACCATCAAAAGCTAGTTAGAAAGATAAAGCTAATAAAGGTAAAATATTAAACATGTTTTAAAATATTGTTCACAGTAATAGAAAAGAAGTCATAAGGATGGTTCATAAGTAATGGCCTAGTAAATTACGTAGCAAACAGCTGCCATCCTTATTAAAGAGTGGGTAGGATTTCATAAATACAACAGCAGAAGTTCATTCTTAGGTGCACATCATGAGTAGAAGTGTGAAGGTTATTTAATCCTTATAAAGATACAGGGAGTAAAGAAGATTTAAATGTAAGTTAAAATAATGCATTTATATAGTAGGTAAAGGAAGTGTTTTAATAAAAGAATAGAGTAACACTGCTCTTGTGGGCAAGTCATTAAACCAGTTTTACTTCCCTGAAGGTCCTTTAGGGTGACAGACACTTGTAAGGTTAGAGACTTGAGCTAAAATGCCTATTGAGCTGAATGTCTGCTCAGTGCCTCTCAACAGTCTCCATGTTTCAGTTCTCTAAATGCCCATTTGTGCTGTGTTGATAACACTCAAGCAGGATTATATTTGCACAGAGCAGGTATAACAGTTCTGAGTCATTACCAGATTTGAAAGCCTTACTACATTGATTATTTGAACCTGCATGATATTCTAAATCTAATATTACACGCTCTGTTCCACTGTTCACAGGCTAGTGTTGATCACACTAGATTTCACAGTTTTGATCAGGAGAAAAAGAGGACTTTATGTGTGAATTTATAAACACTTTTCTAAAGCCAGTGATCTATTTGACATGTCAACTCTTTCTTACCTTAAAAATCAGTTTTTGTTTTAATACTAAAATCTTATATTTTTCAG
Seq C2 exon
GCTGCAAACTGTTGTACAAACAGGACTTTGCAAGGCGTTTAGGACTGAGGTGCGTGACTTGCAATTACTGCTCTCAGCTGTGTAAGAAGGGGGCAACAAGGGAGCTGGATGGTGTGGTGAGGGACTTCTGCAGCGAGGAGTGCTGCCGCCGCTTCCAGGACTGGTACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
NA
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development