DreINT0181024 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21632384-21632928:-
Coord C1 exon
chr9:21632778-21632928
Coord A exon
chr9:21632557-21632777
Coord C2 exon
chr9:21632384-21632556
Length
221 bp
Sequences
Splice sites
5' ss Seq
AAGGTCATT
5' ss Score
4.32
3' ss Seq
TGGTTCTATTTTGTCTACAGGCT
3' ss Score
8.21
Exon sequences
Seq C1 exon
GATAAGGTGTATCAGTTCTGCAGCAAGACCTGTTGTGAGGACTACAAGAAGCTCCACTGCATCGTGACGTTCTGCGAGTTCTGTCAGGAAGAGAAGACTCTGCATGAGACTGTGAAGTTCTCGGGGGTGAAGAGACCCTTCTGTAGTGAAG
Seq A exon
GTCATTATTCTAGGTTCAGTTGAACTTCTGTGCATATTTAATAGCACATTGTCCTGTGATTAGATCTACTGCTGTTCACATCATGATGTGTTGTGATTTTATCTTTAGGATATGAGGACATTGTTCTAATGAATTTGACACACTAGACTTCTGATATTATTTTACTGTTGGCATGTTTTTAGTTTTCTGACGGCAGTGATATGGTTCTATTTTGTCTACAG
Seq C2 exon
GCTGTAAGTTACTGTTCAAGCAGGATTTCATCAGGCGTCTGGGTCTGAAGTGTGTGACTTGCAACCACTGTACACAGATGTGCAAGAAATCTGTCACTAAACAGATAGACGGAGTCAGCCGGGACTTCTGCAGCGAGACCTGTGCTAAGAAGTTTCACGACTGGTACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
NA
C2:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCTGCAGCAAGACCTGT
R:
ACTTCTTAGCACAGGTCTCGC
Band lengths:
292-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]