RnoINT0169132 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37198128-37202358:+
Coord C1 exon
chr15:37198128-37198284
Coord A exon
chr15:37198285-37202181
Coord C2 exon
chr15:37202182-37202358
Length
3897 bp
Sequences
Splice sites
5' ss Seq
AGTGTGTAT
5' ss Score
-9.9
3' ss Seq
AAAAATACAACATTTTTCAGGCT
3' ss Score
3.68
Exon sequences
Seq C1 exon
AACAAAGTGCATCAGTTCTGCAGCAGAACTTGCTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGCCAAGAGGAGAAGACTCTGCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAGGCAAGT
Seq A exon
GTGTATACAGCATTGTTCCTCTAATATATATATATATATATATATAATGTTTTTTGCTAAATTATTTAAGGAATATATAATTACAAACGTCCAGAATAGGTACACAATTTTAATATAGTTTAACAAAACTTAGTTTAGTTTTCTACTGAATCTTTTTTTGTTGTTGTTGTACATGTATTTTTAGACTTCTGGGCCTAAAGGTTTCATCTCTAGAAATATGGGGATACAGTGAAAGAAAGCATTGTCGTACCGTGTTACTGCTAGAATTGTACTTGTGCCCTGAAAGTTGATTTTCAAGAACAGGAAGAATGCTTTGCATTAGCCCATTTCCCCTACCGGCTTGCAGCTGTAGAGTTTTTTTAGTATATAGATTGATCATCACTGACCCCAAAATCTGAAACCCATGATACTCCAGAAGTTTCAGGTTTTGGATTTTCAGTTTAAGGAAGTCACTAAAGTCCATGCAACTGTTCAGAACAAATACCCCACAAAAAGCCCCCAAATTTCTCAGACCCAAAGCGTTTTAGTAAGTGTGGTTGAGGAAGAGGTGGGAGGGCTTACATGCAGGAATAAACACAGTGGATCCATTGTGGTCTGTGATGTCTGAGACACATTGGGTTCACAAGTGCCCTTTCTCCTCACTTAGAGTTGCACTGGCCTTATACAAGAATCAGGTTATAGACATGAATTTGAGCTCTGAATTTATTTCTCCAGAGTTAGAAACAGGATTGGGTTTTAGGTGTTCTTTGTTGCTAGTGTTTACAACTGTCACATTTTTGCTCTTAATTTGACTTTTATCTTCTGTCTTTTGTTGGGAATCAATAATGTATCTGTTCTATTTTCTTCTCAAATATCTATCTATCTATCTATCTATCTATAGACATATATATACATAGACATACACACAGACATATATATATGTGTGTATGTATATGTGTGTGTATATATAGATATACCCCCCCCCCCCCCCACTTAAAGAAAACAGCTCTTTCCAACCTCCATTAGAAGCCATCAACTGTGAGGAGCTATATTCCTATTACTTTTTTTGTTTGTTTTTTCAGACAGGGTTTCTCTGTGTAGTTCTATTGTGTAGACCAGGCTGGCCTTGAACTCAGAGCTTTATCTGCCTCTTCCTAACCCAAGTGCTGAGATTAAAGATGTGTTGCTCCTTACCCCCCCCCCCCCCCCCCTTGGAGCGCCCCTCCTATCACAGTTTTTAAGGCCTCTCTTCAGTGACTTCCTGTCTTGACAGTTTTGTTTTGTTAGGGTGGAGTTAGAAATCATAGGGAAGCCTTCAGTATCTCACATTCTCAATTGTGAGTCTGTAGTCATTAGCAATAAATACCATTACAGAAAAGCTGCCTATCTGTTGTTTACACCTGTTCTTTTTCCATTGAGGACTCTTTGTCCCCTGCTTCTACTTTTTCTGTAAATTCCTGTATCAGATTTGGGGCAAAAGGGAAGTTGGATAATCCTGAATGCCAACAGTCAGTGGCAGAGAGAAAATGTTTGTTTATGATATCTCCATACATCTCACATAGTACAGAATGCATGTTAGAAGGTATTCACAAAGCAGAAGAGAAAATGTTTGTTTATGATATCTCCATACATCTCACATAGTACAGAATGCATGTTAGAAGGTATTCACAAAGCAGAACGTTTCTACGTAGTTGTAATTGCTACATCCCACCCAGAACCATCCTTTACTGTTATTTTCTAAGAGCAAAGTTATAGTAAGAATGACCAGTTCTAAGGTGTGATGTCACACATCTTTAATCCCAGCACTCAGAAGGCAGAGGCAGTTAGGTTTCTGTGAGTTTGAGGCCAACCTGGTCTACATAGCAGGTTTCAGAACTGCTAGGTCTATTATGTAGAGAAACCCTGTCTTGAAAAAGCAATAGAAAATTAATACTGAGTTGATTTACTCCATCACCTACATTTTTGTGCCAAAAATCGTATAATTCACCTTAAGTCTGAACATATTGATTATTAATATATCCATCAGTGATCTTACAGAGATTATATTTTTATAAATCTAAAATGGATTTTATTAAATTGAAGAGTGCATCTCAAATATTTATTTGGTACTTAGAAACATAATTTTTATTGGGAAGGACTTAGAGTTTCAAGTGGGTAAAAGTGTTAAGGATATGAATTTTTATTTTTACTTTTTACTACTGAATGAGTTTTTATTTTTTATTTTTTTAAGTCCTTTGTTACCCAACCTAGTTTTCTAGGTAAAGTATTTACTATCAGTCAAATTCAGTAAATTGAAAAAGGCCAGGTGCGGTGGCATATACTTTCAATCCCAGTACTCTGAAGGCAAAGGCATGAAGATCCCTATGAGTTTCAGAACAGCTTGATTGACACAGTATGTTCCAAGACAGCCAGGGCCACATAGAGACTGTCTCCAAAAACCAAAACCAAAAACCAACCAAATACCCAACAACAAAAAACTAAAGATGTAATTAAATATTTTAAAATATAGTTCAAAGGCTGGTGACGGTTCATTGGAGAAAGATGAGAGGCCTGGTGACCTGTTTGATTCCTAGTACTCATATAATAGAACTGACTTTTTAAAGTTGTCTTGACTGCCGTGTGTATGCTATAGCATGATGACATGACATGACACATACATATTTACATATGCAAATCGGTAAATGTAATTTTAAACAAAATATAGTTCATAGTAATAAATTATAGGATGTTACATAGTGATTTGCAAAACTTTTATTTTTTAAAGATGTATAGTTAGGTATGGTGGCAGTTGCCTACAATCTTAACACTTGGGCATCTGAAGGAGGAGGATTGGAAGTTCAAAGCCATCCTGAGTTAGATTGTAATGAGACCCAGCTTCTAAAAGCAGAGATTCACAGATAAGGCAGAACATTTAAACACTTGAGTTCATGAAACATTGTATATGGTAGAATTAAAATTTGAGCTTTTTATTAAAGGGTAGATCAGATTTCCCAGATATTAGTAGATTAATCTACTTACATGAAGTAGCATGAGCAAGAAGAATGTGGAGGCTTATTTAACTTTAGAGGTAGTACAGGTGGAAATTAGATATGTCAAAATACATTTATGCAGAAGATAAGGAGGTATTTCATTAAAGGAGTAGATAGCAAAGTATTTTCTCTAGTCAGAGTTCTATTTTCTTGAAGAATTTCTATATGAAAATAAGCTGTTAGGAAGAATCTAGAAAACTTGAATAAATGCCTTCTAAAGAATATATCTGAATTTGGTCAGAACTTTTAAGCAGTCTGCATTCATTTTGCAACACACTCACTTGTATCTTTGTGATTTTATTCAAATAGAAAACAGTTCTGAAGCATTACTAGGTTTAATGTCTTAAAAGTATTGTTTGAACCTATGTGATGGATGATAGGTTTTCTAGTATAATAATGTTCTGTTCTAATTTCTACAGGTTGGTGTTGTTATAATAGACGTAGTATTTCAGAGGGCCTGGGGGAAAAGTTCAGTCAGTAAAGTGCTTGCTGTTCAAACATGAGGCATAAATACCTGAGTTTGGTCCCTATCATCTATGTAAAAGGTGGACCTGGCAGTCTGTAGCCCCAGCACTGGGGAAGGGAAGCAGAGACAAGAGGCTTTGGGGGCTTGCTGGCTAGCCAGTCCAGCTATATTAGCAAGCTTTAGGTTCAGTGAGAGACTCTGTTGAGGCAATTGAGGAAGACTACTGGCATCAAGCTCTGGTCTCCACATGCACCCGAGTGTACACATAAAACATGGAGGTTTTTAATCAGAAGGGAAGAGGACTTTATATGAGAATATATTCAACAAACTCTGAATCTGATAATCAGCTAGTCTTTTAAGATTTGTCTCAGTTTAAAATGTGTCGTTTTATGTGTTCTTTTTAAAAAATACAACATTTTTCAG
Seq C2 exon
GCTGCAAGCTGTTATACAAACAAGATTTTGCAAGACGATTAGGATTAAGATGTGTTACCTGCAACTATTGTTCTCAATTGTGTAAGAAGGGAGCCACTAAAGAGCTGGATGGAGTTGTCCGAGACTTCTGCAGTGAAGACTGCTGTAAGAAGTTCCAGGAGTGGTACTACAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=26.4)
A:
NA
C2:
PF064679=zf-FCS=WD(100=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]