BtaINT0164733 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36393300-36394286:-
Coord C1 exon
chr12:36394172-36394286
Coord A exon
chr12:36393551-36394171
Coord C2 exon
chr12:36393300-36393550
Length
621 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
AATATTTCTCTCTATTTAAGGGT
3' ss Score
9.91
Exon sequences
Seq C1 exon
TACTTGTGTGGTAGTAATCGAAAAGACAACATATTTATTGATCCAGGATACCAGACATTTGAGCAAGAATTGAATAAGATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
Seq A exon
GTAATGCTCCTTTAAATACAGTAGCAGTGACTTTCTGCTGGGATCTCCTTGTTTTTATAGAAAGTGTGGCTAAAATTAAGAAATAATTTAAATTAGAGAGTACTTATTTATGAATGTATCAGATCATCCTTTGTTGAATTAGAACTGAATGTGATTGATAACTAGTGTTTATGAAGAACTTTGTGATAAATGTGACTCAGTTTCTCTAGAATAAGAAATAAACTGGATGTTTGTTTCTCAAGCCCTTTAGTAGAGATTCTGATATAAATTTCTCTTAGAAACCTGTTTTAGACGTATAAAGAAAACTTGTTTGAATGGAAATGACCTATTTTTTTTCAGGATTTCTACAGATTTAAATCCCCTTCTGACCACAGTCTGCTCGTCACCTGGAAGACCAGGAGCAGACCCCAGGCCTGGCCCCAGGGTCTAATTGTGTAGTGTGTTATGGTTCTGGCTCTGTGTTGTTTCAGAGCCATGTAGGGGATGCTGAAATTCATTCTAGTTGCCCTGGAGTGAATGGAGGATTGGATTAGGTTTGTTCTTGAATTAACTATCTGTTCCTAGACGGTTACAGGAAAACTGTTTATTGTAATTCTTTAAAAATATTTCTCTCTATTTAAG
Seq C2 exon
GGTCAATATTTTCTCGAGTTGAAGAAGATTATCTGTGGAGGATAAAACAGCTAGGATCACACTCTCCAGTAGCTCTTCTGAACACCCTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAGCACTTACGGCTTTCCTTTGGCACTGTGTTTAGGCACTGGAAAAAAAACCCTTTAACCATGGAAAATAAAGCCTGTCTTCGGTACCAAGTGTCTTCCTTGTGCGGAACAGATAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
NA
C2:
PF120123=DUF3504=PU(48.3=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTAGTAATCGAAAAGACA
R:
CGCACAAGGAAGACACTTGGT
Band lengths:
348-969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development