HsaINT0185988 @ hg38
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20082016-20083032:+
Coord C1 exon
chr13:20082016-20082130
Coord A exon
chr13:20082131-20082780
Coord C2 exon
chr13:20082781-20083032
Length
650 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
AATAGTTCTCTCTATTTAAGGGT
3' ss Score
8.37
Exon sequences
Seq C1 exon
TATTTGTGTGGAAGTAATCGAAAAGACAACATATTTATTGATCCTGGATACCAAACATTTGAGCAAGAATTGAATAAAATACTGCGAAGCTGGCAACCAAGCATACTTCCAGATG
Seq A exon
GTAATGCTATTTTCACTAAAGGTGTTGCTCTCTTGATATTAGGATTGTTATTTTTACAGAGTATGTTTGAAAATATTATAATTAAGTCACTTAAATTAGATAACATTTTCTGAACACTTACTCGAGCTCATCTGCCTTTCATCTCTTGTTGAATTAGAAACAAATGTGGTCAATAACTAGTGTTTATGAAGAACTTTGTAAGAAATGTAATCTACTTTCTCTGGAGTACGAGACTGGATGTTCATGTCTTAAGCCTTCCAGTGGAGCTTCTGATGTAAATTTCTCTTAAACCACTGTTTTCAGTCCGTGAAGAAAATGTGTATGTATGTGGAGTCATCAATTTTTTTCAGGAATTTAAATTCCTGAATTTTAATTTTAAAAGGATTTACACTGTTTTCTGACCACTGTTTGCTTGTCCTACTGAAGAACAGAAGCAAACATCCAGTCCCTTATTCCATAGATAATAGTTCCATAGTAGCCTCTGTATTGTTAAAGAGCTGCATAGGTAATTCTAGAATTATTCTAGTTGATCTAATATGAAAGGAGAATTGGTATAGATTTGTCCTTAAATTAACTGTGTCTGCTTCTAGATGGTTAAATGAAAACTTTTATTTATTATAATTCTTTTAAAATAGTTCTCTCTATTTAAG
Seq C2 exon
GGTCAATATTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCACACTCTCCAGTAGCTCTTCTGAATACACTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACGATGGAAAACAAAGCGTGTCTTCGATACCAAGTGTCTTCCTTGTGTGGAACAGATAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741:ENST00000382870:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
NA
C2:
PF120123=DUF3504=PU(48.8=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGAAGTAATCGAAAAGACA
R:
CCACACAAGGAAGACACTTGGT
Band lengths:
349-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains